Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   2.9  
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)                28   3.8  
SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)            28   3.8  
SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)                   28   3.8  
SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)               27   5.0  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   5.0  
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   27   6.6  
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 203

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 131 CCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRK 250
           C  ++H G+++ I   + R Q+ G+  R    C TS+ ++
Sbjct: 6   CATVFHDGAMNPIEVIKQRLQMYGSPYRGVIHCATSVFKE 45


>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
          Length = 382

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 154 PPVPYIT-APPTAFTTNGS*KPHVP 83
           PP PYI  APP  F  +    PH+P
Sbjct: 291 PPNPYIPPAPPNLFIPSAPPNPHIP 315


>SB_22158| Best HMM Match : Lipoprotein_15 (HMM E-Value=8.4)
          Length = 184

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/29 (48%), Positives = 14/29 (48%)
 Frame = -2

Query: 187 PSTGATNGVNRPPVPYITAPPTAFTTNGS 101
           P T        PPVP   APPTA  T GS
Sbjct: 141 PETPPPPDTPAPPVPPTEAPPTAPPTGGS 169


>SB_15233| Best HMM Match : fn3 (HMM E-Value=1.1e-15)
          Length = 594

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 143 WHWGSVDSISGSRARFQLSGNSGRKHSR 226
           WH  S +S++G R R+ +S  S   H+R
Sbjct: 20  WHCYSEESLTGDRRRYNISKQSTLYHTR 47


>SB_43934| Best HMM Match : Band_41 (HMM E-Value=1.2e-15)
          Length = 378

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 143 WHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILR 247
           + W  VDSI+ S+A+F  S  +   H    T  LR
Sbjct: 265 YEWPLVDSITASKAKFYFSCATNENHKEQGTVCLR 299


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 378 PNKTEKVRSWSDGENG*CLASPHGVGATMAAA 283
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/40 (27%), Positives = 26/40 (65%)
 Frame = +2

Query: 176 SRARFQLSGNSGRKHSRCCTSILRKFMAGSIVSQLTAAAM 295
           +++ FQ++G +G++ +  C  ++R+F    + SQL+  A+
Sbjct: 129 AKSFFQVNGKNGQEET--CEDLVREFEGNGLFSQLSLEAL 166


>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 291 AAAVNCDTMLPAINFRSMLVQQRLC 217
           AA +NC TM PAI    +L++   C
Sbjct: 38  AAVINCITMFPAIILNVLLMRAMSC 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,793
Number of Sequences: 59808
Number of extensions: 262994
Number of successful extensions: 579
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)