Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    29   1.4  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z93388-14|CAN86927.1|  226|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z93388-13|CAB07666.1|  383|Caenorhabditis elegans Hypothetical p...    27   5.7  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    27   5.7  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +2

Query: 110  SGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 205
            SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 976  SGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = -2

Query: 193 LKPSTGATNGVNRPPVPYITAPPTAFTTNGS*KPHVP 83
           + PSTG T      PVP  T  PT  TT    KP VP
Sbjct: 515 MTPSTGTTT----VPVPTTTGSPTTQTTAPVTKPTVP 547


>Z93388-14|CAN86927.1|  226|Caenorhabditis elegans Hypothetical
           protein T10C6.10b protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 116 YH*WQLEAPCSFNFCSLRAI 57
           Y+ WQ + P +FNF S RA+
Sbjct: 83  YNNWQKDRPLTFNFTSKRAV 102


>Z93388-13|CAB07666.1|  383|Caenorhabditis elegans Hypothetical
           protein T10C6.10a protein.
          Length = 383

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 116 YH*WQLEAPCSFNFCSLRAI 57
           Y+ WQ + P +FNF S RA+
Sbjct: 83  YNNWQKDRPLTFNFTSKRAV 102


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/35 (48%), Positives = 17/35 (48%)
 Frame = -2

Query: 187 PSTGATNGVNRPPVPYITAPPTAFTTNGS*KPHVP 83
           PSTG T      PVP  T  PT  TT    KP VP
Sbjct: 573 PSTGTTT----VPVPTTTGSPTTQTTAPVTKPTVP 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,048
Number of Sequences: 27780
Number of extensions: 193961
Number of successful extensions: 427
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)