Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   1.4  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   5.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 11  RTLNFLNQHSSFY 49
           RTLN LN H S Y
Sbjct: 412 RTLNSLNNHKSIY 424


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 104 QLEAPCSFNFCSLRAIRRY 48
           + +   SF  C L+A+R Y
Sbjct: 131 ECDVALSFKLCMLKAMRNY 149


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -2

Query: 352 LERW*ERVMFSITSWRGG 299
           LE W ++V  ++  W+ G
Sbjct: 192 LEVWRDKVFITLPKWKDG 209


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 249  NLWPAALCHS*LLLPW*PPRHEV 317
            NL   AL  S +L+ W PP  E+
Sbjct: 1012 NLEARALSSSEILITWSPPLPEL 1034


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 249  NLWPAALCHS*LLLPW*PPRHEV 317
            NL   AL  S +L+ W PP  E+
Sbjct: 1008 NLEARALSSSEILITWSPPLPEL 1030


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,056
Number of Sequences: 438
Number of extensions: 2267
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)