Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0903
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15840.1 68417.m02409 expressed protein                             30   0.77 
At1g48620.1 68414.m05439 histone H1/H5 family protein weak simil...    29   1.8  
At5g07790.1 68418.m00892 expressed protein                             28   3.1  
At5g56890.1 68418.m07099 protein kinase family protein contains ...    27   4.1  
At1g68430.1 68414.m07817 expressed protein                             26   9.4  

>At4g15840.1 68417.m02409 expressed protein
          Length = 660

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 167 ISGSRARFQLSGNSGRKHSRCCTSILRKFMAGSIVS 274
           +SGS   FQ S NS     R CTS++ K   GS+V+
Sbjct: 115 VSGSNLVFQQSSNSQTNFGRPCTSVVDK-TEGSVVA 149


>At1g48620.1 68414.m05439 histone H1/H5 family protein weak
           similarity to HMG I/Y like protein [Glycine max]
           GI:15706274, HMG-I/Y protein HMGa [Triticum aestivum]
           GI:20502966; contains Pfam profiles PF00538: linker
           histone H1 and H5 family, PF02178: AT hook motif
          Length = 479

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 193 LKPSTGATNGVNRPPVPYITAPPTAFTTNGS*KPHVP 83
           + PS  ATN  + PP P  T+ P    TN    P+ P
Sbjct: 1   MDPSLSATNDPHHPPPPQFTSFPPFTNTNPFASPNHP 37


>At5g07790.1 68418.m00892 expressed protein
          Length = 616

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +2

Query: 107 ISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSRCCTSILRKFMAGSIVSQLTA 286
           +  KR RR   +   G+   +S + A   +S  SGR+ + C TS+ +  +  + +S   A
Sbjct: 414 VKRKRSRRISLVAE-GNYQQVSAAEAIVDISRKSGRETAACITSLSKNLLWFADISSSVA 472


>At5g56890.1 68418.m07099 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 1113

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 187 PSTGATNGVNRPPVPYITAPPTAFTTNGS*KPHVPLIFV 71
           P + A++  + PP+  + APP + +  G     VP++FV
Sbjct: 62  PPSKASSQPSLPPLADLAAPPPSDSVGGKAPAGVPVVFV 100


>At1g68430.1 68414.m07817 expressed protein
          Length = 146

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 208 RQEAQPLLHKHTTEIYGRQ 264
           R+E QPL+H H  ++ GR+
Sbjct: 53  RREQQPLIHHHHKDVAGRK 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,270,797
Number of Sequences: 28952
Number of extensions: 184325
Number of successful extensions: 426
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)