Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0900
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    29   0.52 
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.1  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      26   4.8  

>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 530 RN*KKNKFSTRTLISLPTTRSKKSIEHCINE 622
           RN KKNK    T I  PT  SK+ +E+ + E
Sbjct: 524 RNNKKNKKGKHTQIEDPTAASKEELENLVRE 554


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 636 ARAVEITTVRLGN-FVPTCEQFCIYCL 713
           A  V++T  +L N F+PTCE+ C   L
Sbjct: 513 ANEVQVTCEQLQNGFIPTCERLCTILL 539


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 43  KSNHMTPACINYYNSNTICVFNRNVHWVILLTDCFDRNKF 162
           +++H    C   +N N  C++  +++W      C+D NK+
Sbjct: 339 ENHHFCAGCSEVFNVNIPCIYRDDLYW---CQTCYD-NKY 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,825
Number of Sequences: 5004
Number of extensions: 55522
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)