Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0900
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0465 - 34130083-34130340,34130421-34130541,34131158-341311...    29   3.8  
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495...    29   5.0  
09_02_0253 - 6319198-6319240,6319364-6319552,6319650-6319995,632...    28   8.8  
02_01_0120 + 884467-887649                                             28   8.8  

>03_06_0465 -
           34130083-34130340,34130421-34130541,34131158-34131186,
           34132259-34132382,34132594-34132816,34132948-34132980,
           34133106-34133208
          Length = 296

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = -2

Query: 563 YVLKICFFFNFALDHCEIELFCINVANAPVTFYYYLILCNKK*STTVLRIFQINYH*FSM 384
           +++ + FFF   L+  E    C++V   PV F+ +      +  + VL +  + Y  F  
Sbjct: 103 WLVSVAFFFAARLNGNERWRMCLHVHMYPVLFFLFPFFALSELESCVLDVLAVVYWPFYF 162

Query: 383 KTSDVKMA 360
           K S   M+
Sbjct: 163 KKSAYAMS 170


>03_02_0014 +
           4955759-4956106,4956229-4956277,4956372-4956579,
           4956700-4956874,4956981-4957046,4957150-4957263,
           4957366-4957482,4957589-4957715,4957826-4958112,
           4958209-4958399,4958937-4959022,4959117-4959193,
           4959330-4959473
          Length = 662

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 136 TDCFDRNKF*FLA-TQYNCTLSVFSIVFFRVLQLISSLKRLCPNSYLSSIL 285
           T  F R+   ++A  Q   +  V SIV    L+LI+ L +  PN+ LSSI+
Sbjct: 401 TGSFSRSAVNYMAGCQTAVSNIVMSIVVLLTLELITPLFKYTPNAILSSII 451


>09_02_0253 -
           6319198-6319240,6319364-6319552,6319650-6319995,
           6320811-6320893,6320977-6321074,6321384-6321461,
           6321891-6322000,6322083-6322180,6323199-6323296,
           6323403-6323463,6323688-6323831,6324103-6324206,
           6324634-6324787,6324860-6324879,6324967-6325029,
           6326521-6326632,6326711-6326796,6326872-6326899,
           6327242-6327293,6329034-6329250
          Length = 727

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = -2

Query: 530 ALDHCEIELFCINVANAPVT------FYYYLILCN 444
           ++DH +++  CI + +  +       F YYLILCN
Sbjct: 276 SIDHVKLQYLCITIYHLLIACFTVNYFIYYLILCN 310


>02_01_0120 + 884467-887649
          Length = 1060

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 316 DLHKNNVKTEIPN*FAIFTSLVFI 387
           +L +NN+  EIP  FA FTSL F+
Sbjct: 378 NLGRNNLTGEIPATFAAFTSLSFL 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,973
Number of Sequences: 37544
Number of extensions: 276078
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)