Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0900
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)                   29   5.1  
SB_58543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)            28   9.0  
SB_41925| Best HMM Match : MutS_I (HMM E-Value=1.6)                    28   9.0  
SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)           28   9.0  

>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 566 VYVLKICFFFNFALDHCEIELFCINVAN-APVTFYYYLI 453
           VY++ + F +  A+ HC + ++C N A    +T+YY+ +
Sbjct: 152 VYLVGMGFTWILAVTHCFVFVYCFNSARLRDITYYYFAL 190


>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
          Length = 1277

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 533  FALDHCEIELFCINVANAPVTFYYYLILCNKK*STTVLRIF 411
            +A  HC  + F + +A A + FY  +IL NK   T +++ F
Sbjct: 1092 WAARHCTTDHFVLFIALALLQFYRDIILDNKMDFTDIIKFF 1132


>SB_58543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 305 VAG*KCSKMLDKYELGHSLFKLEIN-CKTLKKTIENTDNVQLYCVARNQNLFLSKQSVNN 129
           V G  C    DKY+LG+ LF   I    T+   +E+ D   + C+     L++  Q +  
Sbjct: 345 VIGRLCFDWQDKYQLGNLLFISFIAVLNTIAVAVESRDTYDMVCLYAGLALYVILQCMAG 404

Query: 128 I 126
           I
Sbjct: 405 I 405


>SB_44105| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=0.42)
          Length = 326

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -2

Query: 305 VAG*KCSKMLDKYELGHSLFKLEIN-CKTLKKTIENTDNVQLYCVARNQNLFLSKQSVNN 129
           V G  C    DKY+LG+ LF   I    T+   +E+ D   + C+     L++  Q +  
Sbjct: 190 VIGRLCFDWQDKYQLGNLLFISFIAVLNTIAVAVESRDTYDMVCLYAGLALYVILQCMAG 249

Query: 128 I 126
           I
Sbjct: 250 I 250


>SB_41925| Best HMM Match : MutS_I (HMM E-Value=1.6)
          Length = 261

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 305 HIDETFTKIMLKLKYRINLPFLRH*SSSKIN 397
           H+D++FTK + KLK   N P + + S  K N
Sbjct: 140 HLDQSFTKTVTKLKVFENDPEISNLSKEKTN 170


>SB_15383| Best HMM Match : Transposase_21 (HMM E-Value=0.53)
          Length = 297

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +2

Query: 434 FIFYYIILDSSKM*RVRLQRLYKIALSRS 520
           ++FY+IIL+     R +LQ ++ +A++RS
Sbjct: 52  YMFYFIILNLPLQYRTKLQDIHLVAIARS 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,178,105
Number of Sequences: 59808
Number of extensions: 378791
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)