Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0900
(732 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 23 3.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.2
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.2
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 5.2
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 5.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 5.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 5.2
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 22 6.8
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 6.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 6.8
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 9.0
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.0 bits (47), Expect = 3.0
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2
Query: 161 FDSWQHNIIVRYLY 202
F+SW HN++ LY
Sbjct: 160 FESWTHNVLDMVLY 173
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 97 KLYYCCSN*YMRESYDLTFR 38
K Y CC Y+ ++++T R
Sbjct: 222 KFYTCCDEPYLDITFNITMR 241
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 97 KLYYCCSN*YMRESYDLTFR 38
K Y CC Y+ ++++T R
Sbjct: 222 KFYTCCDEPYLDITFNITMR 241
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 22.2 bits (45), Expect = 5.2
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -3
Query: 97 KLYYCCSN*YMRESYDLTFR 38
K Y CC Y+ ++++T R
Sbjct: 218 KFYTCCDEPYLDITFNITMR 237
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 22.2 bits (45), Expect = 5.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 563 YVLKICFFFNFALDHCEIELFCINVANAPVTFYYY 459
+V+ C F F D C + L N+ PV ++
Sbjct: 79 WVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFF 113
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 5.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 563 YVLKICFFFNFALDHCEIELFCINVANAPVTFYYY 459
+V+ C F F D C + L N+ PV ++
Sbjct: 79 WVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFF 113
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.2 bits (45), Expect = 5.2
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -2
Query: 563 YVLKICFFFNFALDHCEIELFCINVANAPVTFYYY 459
+V+ C F F D C + L N+ PV ++
Sbjct: 79 WVIHPCSSFRFYWDLCMLLLLVANLIILPVAISFF 113
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 21.8 bits (44), Expect = 6.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -1
Query: 183 ILCCQESKLISVKTISQQYHPVDISIEH 100
+ C +E + + KTI Y+P +S ++
Sbjct: 401 VSCLRELRNLGRKTIMVNYNPETVSTDY 428
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +1
Query: 505 SSISQWSRAKLKKKQIFNTYTYFVT 579
+++ +W R K+K++F FV+
Sbjct: 402 AAVDEWPRLLRKRKELFIAIVCFVS 426
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/25 (28%), Positives = 15/25 (60%)
Frame = +1
Query: 505 SSISQWSRAKLKKKQIFNTYTYFVT 579
+++ +W R K+K++F FV+
Sbjct: 455 AAVDEWPRLLRKRKELFIAIVCFVS 479
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.4 bits (43), Expect = 9.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = -2
Query: 227 KTLKKTIENTDNVQLYCVARNQNLFLSKQSVNNITQWT 114
K L KTI T ++ L + N + SV +WT
Sbjct: 468 KELSKTINFTYSLALSPDGQFGNYIIKNNSVGGKKEWT 505
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,310
Number of Sequences: 438
Number of extensions: 4036
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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