Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0900
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR...    36   0.028
At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18 pr...    28   5.6  
At2g35280.1 68415.m04327 F-box family protein  ; similar to SKP1...    28   5.6  
At1g50910.1 68414.m05724 expressed protein                             28   5.6  
At1g48660.1 68414.m05446 auxin-responsive GH3 family protein sim...    27   9.7  

>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1165

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 290 CSKMLDKYELGHSLFKLEINCKTLKKTIENTDNVQLYCVARNQNLFLSKQSVNNITQWT 114
           CSK+ +  E+  S  K+ +   T  KT+    +VQ  C++RN +L      +N ++Q T
Sbjct: 783 CSKLKEFPEINKSSLKILLLDGTSIKTMPQLPSVQYLCLSRNDHLIYLPAGINQVSQLT 841


>At3g54360.1 68416.m06008 expressed protein DNA-binding Mel-18
           protein, Homo sapiens, PIR:JN0717
          Length = 405

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -2

Query: 284 KMLDKYELGHSLFKLEINCKTLKKTIENTDNVQLYC-VARNQNLFLSKQSV 135
           KM+D++  GH+  K  +   T K+ +EN +   +Y  V+  +  FL +Q++
Sbjct: 157 KMVDQFIEGHARIKRSVVNGTEKEEVENDNKKVIYADVSMERGSFLVQQAM 207


>At2g35280.1 68415.m04327 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 163

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -2

Query: 563 YVLKICFFFNFALDHCEIELFCINVA-----NAPVTFYYYLILC 447
           Y+  I ++FN  LDHC+++L  I +A        +  Y  L+LC
Sbjct: 89  YIKGIIWYFN--LDHCDVDLHHIGIAANGGQKEAIYMYAMLLLC 130


>At1g50910.1 68414.m05724 expressed protein
          Length = 552

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -2

Query: 389 SMKTSDVKMAN*FGISVLTLFL*RSHQCVAG*KCSKMLDKYELGHSLFKLEINCKTLKKT 210
           S+K   VK+A   G+ V   F  +  +CV    C    DKY L  +L   E N K ++K 
Sbjct: 170 SLKKQSVKIAQ-DGVEVFREFYPKEEECVTLLDCVWKTDKYVLLETLQNSE-NSKPMEKN 227

Query: 209 I 207
           +
Sbjct: 228 V 228


>At1g48660.1 68414.m05446 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 573

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 350 GISVLTLFL*RSHQCVAG*KCSKMLDKYELGHSLFKLEINCKTLKKTIENTDNVQLYC 177
           G++  TL L  S+  + G  C   +  +  GH +F  E+  K +   +E  +NV   C
Sbjct: 432 GLASATLVLESSNSMLTGFTCYADISSFP-GHYVFYWELKAKDVDDVVELDENVLEEC 488


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,964,132
Number of Sequences: 28952
Number of extensions: 258707
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)