Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0896
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyc...   111   4e-26
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.1  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   4.9  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   6.5  

>SPBC29B5.03c |rpl26||60S ribosomal protein L26|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 126

 Score =  111 bits (268), Expect = 4e-26
 Identities = 51/89 (57%), Positives = 72/89 (80%), Gaps = 1/89 (1%)
 Frame = +2

Query: 20  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
           MKF++ VTSSRRK RK HF APS +RRVLMS+PLSKELR+++ ++S+P+R+DD++ V+RG
Sbjct: 1   MKFSRDVTSSRRKQRKAHFGAPSSVRRVLMSAPLSKELREQYKIRSLPVRRDDQITVIRG 60

Query: 200 HYKGQQVGKVMQVYRKKFVYTL-RGFKEK 283
             KG++ GK+  VYRKKF+  + R  +EK
Sbjct: 61  SNKGRE-GKITSVYRKKFLLLIERVTREK 88



 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%)
 Frame = +1

Query: 247 KVCVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRR 384
           K  + IER+ REKANGA+A VGI  SK VI KL ++KDRK ++ R+
Sbjct: 76  KFLLLIERVTREKANGASAPVGIDASKVVITKLHLDKDRKDLIVRK 121


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
 Frame = -2

Query: 328 TLKGECRHML----LLHWPFL----FESSQCIHKLFTIHLHHFANLLAFVVSTYNLNFIV 173
           +L+  C ++L    LL W F     F  + C   LF + +H  ++ L F  + YN  + +
Sbjct: 71  SLQFTCAYLLSQSSLLSWKFFLTAYFIGAFCNQNLF-LAIHELSHNLGFKKTLYNRAYCL 129

Query: 172 FAN 164
           FAN
Sbjct: 130 FAN 132


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 307 VGIHPSKCV-IVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 429
           +GI P K    +K  + KDR A ++RR +G    +G D+  Y
Sbjct: 256 IGIDPEKFSDALKSDVVKDRIASIERRLQGVKVIVGVDRLDY 297


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 429 VFTLVFAKCSQSALCSAIEDCFAVFIH 349
           +F LV    S   +C  IED F   IH
Sbjct: 588 LFNLVATNASDPYICGIIEDTFEDIIH 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,356
Number of Sequences: 5004
Number of extensions: 44224
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)