Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0896
         (503 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          116   1e-26
12_01_0323 - 2459854-2460306                                          115   2e-26
11_01_0317 - 2365493-2365786,2365825-2365953                           79   3e-15
08_01_0391 + 3443989-3444219                                           31   0.53 
12_02_0996 - 25115643-25115708,25115869-25116107,25116484-251165...    27   6.5  
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    27   8.6  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  116 bits (278), Expect = 1e-26
 Identities = 56/79 (70%), Positives = 69/79 (87%)
 Frame = +2

Query: 20  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 200 HYKGQQVGKVMQVYRKKFV 256
            YKG++ GKV+QVYR+++V
Sbjct: 61  SYKGRE-GKVVQVYRRRWV 78



 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 37/58 (63%), Positives = 47/58 (81%)
 Frame = +1

Query: 256 VYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 429
           +++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A+GR  A  K KGK+
Sbjct: 79  IHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  115 bits (277), Expect = 2e-26
 Identities = 56/79 (70%), Positives = 69/79 (87%)
 Frame = +2

Query: 20  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 200 HYKGQQVGKVMQVYRKKFV 256
            YKG++ GKV+QVYR+++V
Sbjct: 61  SYKGRE-GKVVQVYRRRWV 78



 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/58 (63%), Positives = 46/58 (79%)
 Frame = +1

Query: 256 VYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 429
           +++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K KGK+
Sbjct: 79  IHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score = 78.6 bits (185), Expect = 3e-15
 Identities = 37/58 (63%), Positives = 46/58 (79%)
 Frame = +1

Query: 256 VYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGKY 429
           +++ERI REK NG+T  VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K KGK+
Sbjct: 66  IHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 121



 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 45/79 (56%), Positives = 56/79 (70%)
 Frame = +2

Query: 20  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV             VRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47

Query: 200 HYKGQQVGKVMQVYRKKFV 256
            YKG++ GKV+QVYR+++V
Sbjct: 48  SYKGRE-GKVVQVYRRRWV 65


>08_01_0391 + 3443989-3444219
          Length = 76

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 318 VNADICCCSIGLFSLNPLNVYTNFLRYTCITLPTCWPL 205
           ++AD+CCCS  L  +    V  + L + C+ L TC+ L
Sbjct: 41  MDADLCCCSCALIGI-AATVAASLLAFKCL-LTTCYKL 76


>12_02_0996 -
           25115643-25115708,25115869-25116107,25116484-25116577,
           25116726-25116864,25116960-25117081,25117261-25117491,
           25117583-25117644,25118335-25118461,25118890-25119183,
           25119266-25119622
          Length = 576

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 306 CRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSH 452
           C H+  K C C +  E + Q+  R  +  Q     ++   I R   HS+
Sbjct: 479 CNHNYMKQCKCSIAQEPQLQARARQNAASQQSQLHEKGRQIDRSAVHSN 527


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = +2

Query: 23  KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 184
           +F  + ++S++    ++F     I+   +   L +  R+K    S+P+      R  D V
Sbjct: 42  EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101

Query: 185 QVVRGHYKGQQVGKVMQVYR 244
           QV+ G  KG +VG+V ++++
Sbjct: 102 QVIAGREKG-KVGEVTRLFK 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,335,900
Number of Sequences: 37544
Number of extensions: 286020
Number of successful extensions: 734
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)