Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0896
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   3e-31
SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   0.94 
SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)           30   0.94 
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      29   2.2  
SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)            28   5.0  
SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)             28   5.0  
SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)              27   6.6  
SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_39450| Best HMM Match : Picorna_P3A (HMM E-Value=4.8)               27   8.8  
SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)           27   8.8  

>SB_31444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score =  131 bits (317), Expect = 3e-31
 Identities = 60/79 (75%), Positives = 72/79 (91%)
 Frame = +2

Query: 20  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
           MK N +V+SSRRK+RK HFSAPS +RR LMS+PLSKELRQK+NV+S+P+RKDDEVQV RG
Sbjct: 1   MKRNSEVSSSRRKSRKAHFSAPSSVRRKLMSAPLSKELRQKYNVRSIPVRKDDEVQVTRG 60

Query: 200 HYKGQQVGKVMQVYRKKFV 256
           H+K QQVGKV+QVYRKK+V
Sbjct: 61  HFKSQQVGKVIQVYRKKWV 79



 Score = 77.4 bits (182), Expect = 6e-15
 Identities = 37/56 (66%), Positives = 45/56 (80%)
 Frame = +1

Query: 247 KVCVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGK 414
           K  ++I+RIQREKANGAT  VGIHPSK  IVKLK++KDRK ILDR+ + +LA  GK
Sbjct: 77  KWVIHIDRIQREKANGATVSVGIHPSKVEIVKLKIDKDRKKILDRKNRSKLAEKGK 132


>SB_56015| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 20  MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMP--IRK 172
           MK + Q+    RK+ K H   P HIR+    S + K +R+  N  + P  IRK
Sbjct: 1   MKTHSQIQKHTRKS-KTHSQIPKHIRKSKTHSQIQKHIRKSKNTLANPKHIRK 52


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 291 WSNSICRHSPFKVCDCQVEDE*RPQSNPRSQSKGQTGCTWQRQG*IHRGNCHSHG 455
           W N IC     ++C C+V DE     N + ++    G TW R    +R   +  G
Sbjct: 525 WHNRICMR--VEICGCKVCDEPLGMENSKIKANDIEGHTWTRNREPYRARLNYRG 577


>SB_19506| Best HMM Match : Viral_helicase1 (HMM E-Value=2.7)
          Length = 828

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 382 CDRGLLCGLYSSST*QSHTLKGE-CRHMLLLHWPFLF 275
           C  G +  +   ST  +  L+G+ CR M+LLHWP  F
Sbjct: 325 CKNGKVPVVSGGSTYDTWPLQGDFCRTMMLLHWPNWF 361


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 465 LRGLHGCGSFLGVFTLVFAKCSQS 394
           L GLH CG  +     VFAKC Q+
Sbjct: 72  LVGLHPCGDLVPTMLKVFAKCDQA 95


>SB_46751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 4   GEERQNEVQQAGDFLKK--EKQEEAFQCSFTYKASVDVLSPV*GTKTKIQ 147
           G E++    +A ++ KK  E  +  F C   Y  +V  +    GTKTKIQ
Sbjct: 163 GNEKKKFTYEALEYAKKSVELDDRDFACHKWYAITVSNVGDFEGTKTKIQ 212


>SB_21731| Best HMM Match : Ribosomal_L13e (HMM E-Value=7.2)
          Length = 606

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +2

Query: 26  FNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDD 178
           F+    S  +K+ +R+F   +HI + + +S  SK+ ++    K    + DD
Sbjct: 124 FSTSQASRPKKSNRRYFPTSNHIAKAISASRYSKDDQESLKRKVEEWQTDD 174


>SB_18074| Best HMM Match : Trypan_PARP (HMM E-Value=0.081)
          Length = 524

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 26/99 (26%), Positives = 44/99 (44%)
 Frame = +2

Query: 143 FNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVYTLRGFKEKRPMEQQHMSAFTL 322
           ++V     +  + +  V   YK   +GK + V ++   +T    KEK  +E++   A   
Sbjct: 111 YSVHKEKAKPAEPILPVGSVYKRANIGKDINVKKRDEFWTQEQQKEKERIEEEKNRAAAH 170

Query: 323 QSV*LSS*R*IKTAKQSSIAEQRADWLHLAKTRVNTPRK 439
           Q   L   R  +  KQ  + ++R D  HL K R  + RK
Sbjct: 171 QQE-LERKRKEREEKQQEV-DERED--HLQKKRSESLRK 205


>SB_50053| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 959

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +2

Query: 86  SHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQ--VVRGHYKGQQVGKVMQVYRK 247
           + ++++   + + K LR+    K+MP R+D+++Q  V    YK ++VG+  +  R+
Sbjct: 139 NEVKQLGNGNNMEKILREFIKKKNMPKREDEKLQGNVSGRDYKNKKVGQKSEEQRE 194


>SB_31500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1446

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +2

Query: 176 DEVQVVRGHYKGQQVGKVMQVYRKKFVYTLRGF 274
           DE+Q ++   + Q+VGK++ V ++K  +  + F
Sbjct: 39  DELQTIQNEPQSQKVGKLLDVVQRKDFHVFKRF 71


>SB_49262| Best HMM Match : Virus_P-coat (HMM E-Value=1.8)
          Length = 586

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 79  CSFTYKASVDVLSPV*GTKTKIQCKIHAYSQR 174
           CS   K  ++ L+ + GT  KI+ K HA+S++
Sbjct: 72  CSCKTKTELNALNELLGTDEKIEKKSHAWSEK 103


>SB_40034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 423 TLVFAKCSQSALCSAIEDCFAVFI 352
           T+  + C + + CS I DCF VFI
Sbjct: 221 TMPLSFCQKFSSCSVIIDCFEVFI 244


>SB_56914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 406

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
 Frame = +2

Query: 11  SDRMKFN--KQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEV 184
           S  ++F+  K+  S ++ + K+H S+  HI+ +     + K   +  N+K++  + +   
Sbjct: 84  SGNLRFDACKETLSKKKSSIKKHVSSAKHIKSI---ENIKKSKTKDQNIKNILTKSN--- 137

Query: 185 QVVRGHYKGQQVGKVMQVYRKKFVYTL 265
               G  KG  + + M++YR + V  L
Sbjct: 138 ----GAAKGATLPEDMRIYRYELVEAL 160


>SB_39450| Best HMM Match : Picorna_P3A (HMM E-Value=4.8)
          Length = 284

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -2

Query: 316 ECRHMLLLHWPFLFESSQCIHKLFTIHLHHFANLL 212
           +C+HM +L W    E S+ I  L+  +    ++++
Sbjct: 58  QCKHMHMLRWARFNEHSKAIENLYPAYQQRLSHIM 92


>SB_27040| Best HMM Match : Lac_bphage_repr (HMM E-Value=1.7)
          Length = 276

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 307 HMLLLHWPFLFESSQCIHKLFTIH 236
           H+L  H PF  E  +CI K+FT H
Sbjct: 198 HILFAHVPFFVEKYKCI-KIFTGH 220


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,787,002
Number of Sequences: 59808
Number of extensions: 350695
Number of successful extensions: 1051
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)