Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0896
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical p... 95 3e-20
Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical pr... 95 3e-20
Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical pr... 95 3e-20
Z73425-4|CAA97786.1| 667|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z73103-4|CAA97426.1| 585|Caenorhabditis elegans Hypothetical pr... 28 3.3
AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormo... 28 3.3
AL031637-1|CAA21047.2| 317|Caenorhabditis elegans Hypothetical ... 28 4.4
Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50741-2|CAA90610.1| 383|Caenorhabditis elegans Hypothetical pr... 27 7.7
U23513-3|AAB36862.1| 209|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z68315-10|CAD59149.1| 109|Caenorhabditis elegans Hypothetical
protein F28C6.7c protein.
Length = 109
Score = 94.7 bits (225), Expect = 3e-20
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +2
Query: 20 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
MK N V+S K+RK HF+APSH RR +MS+PL+KELR K ++++PIR DDEV V+RG
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60
Query: 200 HYKGQQVGKVMQVYRKKFV 256
+KG G+V++ YRKKFV
Sbjct: 61 RHKG-NTGRVLRCYRKKFV 78
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 247 KVCVYIERIQREKANGATAYVGIHPSK 327
K ++I++I REKANG+T ++GIHPSK
Sbjct: 76 KFVIHIDKITREKANGSTVHIGIHPSK 102
>Z68315-9|CAA92678.1| 106|Caenorhabditis elegans Hypothetical
protein F28C6.7b protein.
Length = 106
Score = 94.7 bits (225), Expect = 3e-20
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +2
Query: 20 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
MK N V+S K+RK HF+APSH RR +MS+PL+KELR K ++++PIR DDEV V+RG
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60
Query: 200 HYKGQQVGKVMQVYRKKFV 256
+KG G+V++ YRKKFV
Sbjct: 61 RHKG-NTGRVLRCYRKKFV 78
Score = 42.3 bits (95), Expect = 2e-04
Identities = 16/27 (59%), Positives = 23/27 (85%)
Frame = +1
Query: 247 KVCVYIERIQREKANGATAYVGIHPSK 327
K ++I++I REKANG+T ++GIHPSK
Sbjct: 76 KFVIHIDKITREKANGSTVHIGIHPSK 102
>Z68315-8|CAA92674.1| 142|Caenorhabditis elegans Hypothetical
protein F28C6.7a protein.
Length = 142
Score = 94.7 bits (225), Expect = 3e-20
Identities = 45/79 (56%), Positives = 60/79 (75%)
Frame = +2
Query: 20 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 199
MK N V+S K+RK HF+APSH RR +MS+PL+KELR K ++++PIR DDEV V+RG
Sbjct: 1 MKVNPFVSSDSGKSRKAHFNAPSHERRRIMSAPLTKELRTKHGIRAIPIRTDDEVVVMRG 60
Query: 200 HYKGQQVGKVMQVYRKKFV 256
+KG G+V++ YRKKFV
Sbjct: 61 RHKG-NTGRVLRCYRKKFV 78
Score = 74.9 bits (176), Expect = 3e-14
Identities = 32/61 (52%), Positives = 47/61 (77%)
Frame = +1
Query: 247 KVCVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKDKGK 426
K ++I++I REKANG+T ++GIHPSK I KLK++KDR+A+++R+A GR G KGK
Sbjct: 76 KFVIHIDKITREKANGSTVHIGIHPSKVAITKLKLDKDRRALVERKAAGRSRVTGILKGK 135
Query: 427 Y 429
+
Sbjct: 136 H 136
>Z73425-4|CAA97786.1| 667|Caenorhabditis elegans Hypothetical
protein F12F6.8 protein.
Length = 667
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 200 HYKGQQVGKVMQVYRKKFVYTLRGFKEKRPMEQQHMSAFTL 322
H +Q+ Q+ + F YTL FK R + +QH+ L
Sbjct: 64 HRATEQIRLKFQISKIDFTYTLLDFKTFRMLREQHLDTLIL 104
>Z73103-4|CAA97426.1| 585|Caenorhabditis elegans Hypothetical
protein C08F8.5 protein.
Length = 585
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 277 FESSQCIHKLFTIHLHHFANLLAFVVSTYNLNFIVFANRHGFYIE 143
++SSQ IHK +H+ + V YNLN ++ +N Y++
Sbjct: 87 YKSSQFIHKFL---IHNTTTVFTRGVPRYNLNDLLVSNGQKIYVQ 128
>AC006674-1|AAK68390.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 119 protein.
Length = 388
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 499 FKNFIYLKNYLFKRPPWLWQFPRCI 425
F NF++LKN+L + +F +CI
Sbjct: 79 FSNFLFLKNFLIPKTSRFCRFKKCI 103
>AL031637-1|CAA21047.2| 317|Caenorhabditis elegans Hypothetical
protein Y47H9B.2 protein.
Length = 317
Score = 27.9 bits (59), Expect = 4.4
Identities = 7/24 (29%), Positives = 15/24 (62%)
Frame = -2
Query: 463 KRPPWLWQFPRCIYPCLCQVQPVC 392
++ PW ++ +YP LC++ +C
Sbjct: 249 RKYPWYYKMSSAMYPALCELAGIC 272
>Z68113-4|CAA92148.2| 1503|Caenorhabditis elegans Hypothetical
protein E03G2.2 protein.
Length = 1503
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -2
Query: 301 LLLHWPFLFESSQCIHKLFTIHLHHFANLLAFVVST 194
LL W LFE LF I H LLA +++T
Sbjct: 74 LLAVWESLFEHKNVTADLFIIPFFHSFTLLALLIAT 109
>Z50741-2|CAA90610.1| 383|Caenorhabditis elegans Hypothetical
protein F55G7.2 protein.
Length = 383
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 23 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGH 202
KFN+ V RR N K+ P H + + +++++ + S+P K + H
Sbjct: 94 KFNEAVALFRRDNPKKQLLLPKHWDQSTCTQQVAQKITEIAKDLSVPYPKK-----LNQH 148
Query: 203 YKG 211
YKG
Sbjct: 149 YKG 151
>U23513-3|AAB36862.1| 209|Caenorhabditis elegans Hypothetical
protein D2021.8 protein.
Length = 209
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -2
Query: 220 NLL--AFVVSTYNLNFIVFANRHGFYIEFLS*FLRQG 116
NLL A VV ++NL+ ++ A +HG ++E + L+QG
Sbjct: 11 NLLKPAVVVDSFNLHAVISATQHG-HVESVEAALKQG 46
>AF067211-4|AAC16995.1| 532|Caenorhabditis elegans Hypothetical
protein B0205.9 protein.
Length = 532
Score = 27.1 bits (57), Expect = 7.7
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 59 NRKRHFSAPS-HIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQ 235
NR+ ++ H+ R ++ +PL + KFN + + EVQ G + + G
Sbjct: 287 NREASYNLDQGHLYREILEAPLLENRDSKFNPFNAKSGRQAEVQ-RSGTFLNESEGTSTN 345
Query: 236 VYRKKFVYTLRGFKEKRPM-EQQHM 307
++ FV+ RGF ++ P+ EQ H+
Sbjct: 346 A-QESFVF--RGFLKQEPVFEQFHI 367
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,953
Number of Sequences: 27780
Number of extensions: 260010
Number of successful extensions: 727
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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