Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0896
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.2  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   5.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   7.3  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   7.3  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 279 SLNPLNVYTNFLRYT 235
           S+NP+NVYT    YT
Sbjct: 35  SINPINVYTKAYIYT 49



 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 230 MQVYRKKFVYTLRGFKEKRPMEQQHM 307
           + VY K ++YT++    K      HM
Sbjct: 39  INVYTKAYIYTIKSNMAKTLQFDVHM 64


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 313 IHPSKCVIVKLKMNKDRKAILD 378
           +HPS+C   K+   +  K +LD
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLD 37


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 313 IHPSKCVIVKLKMNKDRKAILD 378
           +HPS+C   K+   +  K +LD
Sbjct: 16  LHPSRCTQGKVNYREKEKEVLD 37


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 331 HTLKGECRHMLLLHWPFLFESS 266
           HT + +C H LL H P L + S
Sbjct: 330 HTPEPDCIHELLGHMPLLADPS 351


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 193 YNLNFIVFANRHGFYI 146
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 58  KQEEAFQCSFTYKASVDVLS 117
           K  + FQC   YK   D+L+
Sbjct: 115 KISKIFQCFMKYKTITDILN 134


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 445 WQFPRCIY 422
           WQF +CIY
Sbjct: 129 WQFGKCIY 136


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 445 WQFPRCIY 422
           WQF +CIY
Sbjct: 103 WQFGKCIY 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,957
Number of Sequences: 438
Number of extensions: 2824
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)