Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0890
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0441 - 20820121-20820296,20820554-20820613,20820751-208208... 31 0.69
03_02_0368 + 7840665-7841975 30 1.6
09_04_0265 + 16233596-16233752,16234206-16234720,16236199-162362... 29 3.7
08_01_0786 - 7606984-7607037,7607235-7607379,7608103-7608163,760... 29 3.7
02_02_0549 + 11410129-11412180 29 3.7
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 29 3.7
01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107 25 3.7
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 29 4.8
06_03_0908 - 25858909-25859185,25859765-25859892,25860061-258607... 29 4.8
10_08_0019 - 14167952-14171059 28 6.4
07_01_0146 - 1068314-1068656,1069349-1069507,1069642-1069835 28 6.4
10_02_0061 - 4812903-4812940,4813140-4813536 28 8.5
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407... 28 8.5
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 8.5
>06_03_0441 -
20820121-20820296,20820554-20820613,20820751-20820859,
20820938-20821041,20821387-20822101,20822580-20822719,
20823342-20823672
Length = 544
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 685 PETQRWSQ*SQISVRAGADGVVMTWRLTWRFCWLLAPEAASE 560
PE + W I V A A G V T R+T F W P A +
Sbjct: 239 PELESWDFTPIILVSASASGAVATQRMTSEFSWHYIPGAGDD 280
>03_02_0368 + 7840665-7841975
Length = 436
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -1
Query: 393 GGGDPGAAGEDVSCT--KSEGELTSLGVPGSPAVSRGHGAGVGQ*GTPRWKFCHS*VRSQ 220
GG DP A VSC+ + + L + PG AV R + + TPR + S
Sbjct: 57 GGADPAAYVAAVSCSDCRFKQRLHAPASPGPGAVIRSLFVSLTRRSTPRSSPSPT---SA 113
Query: 219 VQQDGGEHQRWR 184
DGGE ++WR
Sbjct: 114 SGGDGGESEQWR 125
>09_04_0265 +
16233596-16233752,16234206-16234720,16236199-16236229,
16236559-16237001
Length = 381
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 396 TGGGDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAG 277
+G G P AG+ + T+ +G ++ GVPG V HG G
Sbjct: 240 SGRGGP-VAGDVAAATREKGRASAAGVPGG-GVKGKHGGG 277
>08_01_0786 -
7606984-7607037,7607235-7607379,7608103-7608163,
7608273-7608465
Length = 150
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 256 AMEVLPFVSAITSPARWG*APALAAEPPTILV 161
A LPF S + + AR G APAL+A P LV
Sbjct: 12 ARSALPFRSRVAAAARPGRAPALSAAPGRRLV 43
>02_02_0549 + 11410129-11412180
Length = 683
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 340 LAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNN 483
LA +F+G V ++S HL N D IN+NHVG N N
Sbjct: 129 LANNYMGLFNGTGSVGSASNHLFAVELDTIQNPDFRDINNNHVGININ 176
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -1
Query: 378 GAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVG 271
GA G V +K+ GE G P PAV GH A G
Sbjct: 308 GALGHIVRMSKTIGEEIGCGHPVWPAVIHGHYASAG 343
>01_03_0213 - 13860284-13860299,13860480-13860537,13860678-13861107
Length = 167
Score = 24.6 bits (51), Expect(2) = 3.7
Identities = 14/40 (35%), Positives = 16/40 (40%)
Frame = -1
Query: 393 GGGDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGV 274
GGG G GE + E + V G P V AGV
Sbjct: 10 GGGGDGGGGEVEAAVVVEMATERVAVVGDPGVVEVKAAGV 49
Score = 23.0 bits (47), Expect(2) = 3.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -1
Query: 216 QQDGGEHQRWRQ 181
++ GGE QRWR+
Sbjct: 88 REGGGERQRWRE 99
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Frame = -1
Query: 390 GGDPGAAGEDVSCTKSEGELTSLG---VPGSPAVS---RGHGAGVGQ*GTPRWKF 244
GG G G S T S G +G PGS + RGHGA + G P + F
Sbjct: 108 GGRGGGRGRGRSLTNSAGSGRGMGGFVPPGSSSGQGGVRGHGASMSHSGPPAFNF 162
>06_03_0908 -
25858909-25859185,25859765-25859892,25860061-25860765,
25860882-25860944,25861031-25861084,25861338-25861514,
25861644-25861813,25862011-25862065,25862220-25862918,
25863110-25863173,25863515-25863723,25866138-25866227,
25866390-25866617
Length = 972
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 378 GAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVG 271
GA V +++ GE S G P PAV GH A G
Sbjct: 287 GALSHIVKMSRAIGEEISCGHPAWPAVIHGHYASAG 322
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 266 KELRDGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEV 150
K+ R ++ IR C H+ ++GV ++ G NP VE+
Sbjct: 31 KQWRKATNVIRGC-HRLLRLGVLSAAAGIMRRNPSYVEI 68
>07_01_0146 - 1068314-1068656,1069349-1069507,1069642-1069835
Length = 231
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 384 DPGAAGEDVSC--TKS---EGELTSLGVPGSPAVSRGHGAGVGQ*GTP 256
DPG GED+SC KS E +L SL G+ A +G +G TP
Sbjct: 15 DPGRLGEDLSCFLGKSLIKESDLASLVASGAIAEGQGFVSGEALVPTP 62
>10_02_0061 - 4812903-4812940,4813140-4813536
Length = 144
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 43 WRWRPWSW---QKRPSNLTTTTRSVSPGLRVLDAPRKP 147
WRWR W W +R ++ T S++ G R+L R P
Sbjct: 41 WRWRQWWWLEATRRANSSTAVGGSMAVG-RLLPRSRSP 77
>07_03_1704 +
28839628-28839908,28840010-28840123,28840416-28840769,
28841072-28841268,28841496-28841587,28841700-28842027,
28842328-28842535,28843555-28843669,28844023-28844190,
28844804-28845476,28845552-28845758,28845911-28847001
Length = 1275
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 396 TGGGDPGAAGEDVSCTKSEGELTSL 322
+GGG+PG G++ S TK+ G + L
Sbjct: 438 SGGGNPGMMGQNDSSTKTVGNMLHL 462
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 207 GGEHQRWRQNHPQSW 163
GG HQR R +HP +W
Sbjct: 559 GGHHQRRRHHHPPAW 573
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,167,536
Number of Sequences: 37544
Number of extensions: 368069
Number of successful extensions: 1486
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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