Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0890
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    32   0.35 
AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical ...    31   0.62 
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical...    29   2.5  
U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protei...    29   3.3  
M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.     29   3.3  
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical ...    29   4.4  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    28   5.8  
Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.6  
Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical pr...    28   7.6  
AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen prot...    28   7.6  

>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
           protein C52D10.13 protein.
          Length = 281

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 26/73 (35%), Positives = 33/73 (45%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVGQ*GTPRWKFCHS*VRSQVQQD 208
           G PG AG       ++GE   LG PG+P V R   + VG+ G P         + +  QD
Sbjct: 173 GAPGPAGP----VGADGEPGELGAPGAPGVQRTVASPVGEPGEPG----EQGPKGEAGQD 224

Query: 207 GGEHQRWRQNHPQ 169
           G   Q  RQ  PQ
Sbjct: 225 GRPGQPGRQG-PQ 236


>AL023842-4|CAA19517.2|  229|Caenorhabditis elegans Hypothetical
           protein Y44A6D.3 protein.
          Length = 229

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 367 SGGTRVTTSSVHLHGSYNMNNLNNDVAIINHNHVGFNNNIQ 489
           +   R+   S H  G   +NN+NN+    NHNH   NNNIQ
Sbjct: 68  AAAARLNAQSSHSSGPARLNNMNNN-NNNNHNH-SKNNNIQ 106


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGVPGSPAVS--RGHGAGVGQ*GTP 256
           G+PGA G+D    K +GE    G PG P      G   G G  G P
Sbjct: 201 GEPGAPGKDGE--KGKGEPGPAGPPGPPGPGGPPGDAGGAGSDGAP 244


>AL117195-28|CAB55014.1|  458|Caenorhabditis elegans Hypothetical
           protein Y57A10A.11 protein.
          Length = 458

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 390 GGDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAG 277
           GGD GA GE      ++GE    GVPG+P     HG G
Sbjct: 401 GGDQGAPGEP----GADGEPGMDGVPGNPGRDGTHGHG 434


>U40187-2|AAA81159.1|  282|Caenorhabditis elegans Collagen protein 8
           protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVGQ*GTP 256
           G+PG AGED     ++G +   GVPG P +  G     G+ G P
Sbjct: 225 GNPGGAGED----GNQGPVGHPGVPGRPGIP-GKSGTCGEHGGP 263


>M25479-1|AAA27993.1|  282|Caenorhabditis elegans collagen protein.
          Length = 282

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVGQ*GTP 256
           G+PG AGED     ++G +   GVPG P +  G     G+ G P
Sbjct: 225 GNPGGAGED----GNQGPVGHPGVPGRPGIP-GKSGTCGEHGGP 263


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 225 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 106
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 225 SQVQQDGGEHQRWRQNHPQSWYRRSQRLPRRV*DSQPGGY 106
           SQ + DG +HQ   +  PQ  Y +   +   + +  P GY
Sbjct: 355 SQNEDDGQQHQHQNEQQPQQGYHQQDFVSNPLWNQMPVGY 394


>AL034543-4|CAA22518.1|  323|Caenorhabditis elegans Hypothetical
           protein Y81G3A.5 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSE-GELTSLGVPGSPAVSRGHGAG 277
           G PG  G +V C     G + S+G+PG P    G+  G
Sbjct: 199 GIPGVPGANVICPPGPAGSMGSVGLPGPPGNDLGNSNG 236


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +1

Query: 286 VTAAHCWRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLNNDVAII 453
           VTAAHC      Q R F       N  +     +    ++H  YN    +ND+A++
Sbjct: 77  VTAAHC--ALQLQTRSFVYVREPKN--NRERSFSVKEAYIHSGYNNQTADNDIALL 128


>Z81479-3|CAB03942.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.3 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 390 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 304
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>Z81479-2|CAB03941.1|  283|Caenorhabditis elegans Hypothetical
           protein C34F6.2 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 390 GGDPGAAGEDVSCTKSEGELTSLGVPGSP 304
           GG PG AG+  S     G+    G PGSP
Sbjct: 192 GGRPGQAGQTRSAPSPPGQPGQPGEPGSP 220


>Z81138-4|CAB03474.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.6 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGV--PGSPAVSRGHGAGVGQ*GTP 256
           G PG  G D     S G     G   P  PA S G   G GQ G P
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAP 249


>Z81138-3|CAB63321.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.5 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGV--PGSPAVSRGHGAGVGQ*GTP 256
           G PG  G D     S G     G   P  PA S G   G GQ G P
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAP 249


>Z81138-1|CAB03475.1|  304|Caenorhabditis elegans Hypothetical
           protein W05B2.1 protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
 Frame = -1

Query: 387 GDPGAAGEDVSCTKSEGELTSLGV--PGSPAVSRGHGAGVGQ*GTP 256
           G PG  G D     S G     G   P  PA S G   G GQ G P
Sbjct: 204 GAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAGAP 249


>AF067607-9|AAF98609.1|  460|Caenorhabditis elegans Collagen protein
           102 protein.
          Length = 460

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 7/46 (15%)
 Frame = -1

Query: 387 GDPGAAGED-------VSCTKSEGELTSLGVPGSPAVSRGHGAGVG 271
           G PGAAG D          T + GE    G PG P  +   GAG G
Sbjct: 186 GKPGAAGSDGEAGAPGTKTTNAPGEPGPAGPPGPPGPNGEAGAGSG 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,895,009
Number of Sequences: 27780
Number of extensions: 263201
Number of successful extensions: 967
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)