Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0890
         (714 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30180.1 68417.m04291 expressed protein                             30   1.3  
At4g13800.1 68417.m02139 permease-related contains 9 predicted t...    29   2.3  
At4g01985.1 68417.m00265 expressed protein                             28   7.1  
At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3 ...    28   7.1  
At5g67370.1 68418.m08495 expressed protein similar to unknown pr...    27   9.3  
At5g57180.2 68418.m07143 expressed protein ; supporting cDNA gi|...    27   9.3  
At5g57180.1 68418.m07142 expressed protein ; supporting cDNA gi|...    27   9.3  
At5g18450.1 68418.m02173 AP2 domain-containing transcription fac...    27   9.3  
At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family pr...    27   9.3  
At1g23730.1 68414.m02995 carbonic anhydrase, putative / carbonat...    27   9.3  

>At4g30180.1 68417.m04291 expressed protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 25  SSQQY*WRWRPWSWQKRPSNLTTTTRSVSPGLRVLDAPRK 144
           S+Q++ W           SN TTTT S S G+R+L+ P K
Sbjct: 62  SAQEFAWSRFLLQKLSSSSNPTTTTSSSSDGIRILERPDK 101


>At4g13800.1 68417.m02139 permease-related contains 9 predicted
           transmembrane domains; contains Pfam PF05653: Protein of
           unknown function (DUF803); identified as COG0697,
           Permeases of the drug/metabolite transporter (DMT)
           superfamily
          Length = 336

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 224 HKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKT 123
           HK+  MG STS+ G T+H+P    V    G+S++
Sbjct: 294 HKTKDMGNSTSLRGSTSHSPRDTPVFINSGSSRS 327


>At4g01985.1 68417.m00265 expressed protein
          Length = 579

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -1

Query: 393 GGGDPGAAGEDVSCTKSEGELTSLGVPGSPAVSRGHGAGVG 271
           GGG  G+ G       S G    +GV G   +  G G GVG
Sbjct: 461 GGGGRGSGGAGGGTGGSVGAGGGVGVGGGGGIGGGAGGGVG 501


>At1g68050.1 68414.m07774 F-box family protein (FKF1) / adagio 3
           (ADO3) E3 ubiquitin ligase SCF complex F-box subunit;
           identical to FKF1 GI:6960305 and Adagio 3 GI:13487072
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01344: Kelch motif, PF00785: PAC motif and PF00646:
           F-box domain; contains TIGRfam profile TIGR00229: PAS
           domain S-boxidentical to cDNA Adagio 3 (ADO3)
           GI:13487071
          Length = 619

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 304 WRTRNAQARQFTLAFGTANIFSGGTRVTTSSVHLHGSYNMNNLN 435
           WR  N   +   LA+G +    GGTRV     H    + +N L+
Sbjct: 564 WRILNVPGKPPKLAWGHSTCVVGGTRVLVLGGHTGEEWILNELH 607


>At5g67370.1 68418.m08495 expressed protein similar to unknown
           protein (gb|AAC18972.1)
          Length = 327

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 161 YQDCGWFCRQRWCSPPSCWTCDR 229
           Y++ GW+  Q W  PP     DR
Sbjct: 185 YEESGWYDGQMWVKPPEVLARDR 207


>At5g57180.2 68418.m07143 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 435

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 76  PSNLTTTTRSVSPGLRVLDAPRKPL 150
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g57180.1 68418.m07142 expressed protein ; supporting cDNA
           gi|13991645|gb|AF359387.1|AF359387
          Length = 424

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 76  PSNLTTTTRSVSPGLRVLDAPRKPL 150
           PS+ TTTTR+ SP   + ++   PL
Sbjct: 27  PSSSTTTTRATSPSSTISESSNSPL 51


>At5g18450.1 68418.m02173 AP2 domain-containing transcription
           factor, putative DREB2A, Arabidopsis thaliana,
           EMBL:AB007790
          Length = 307

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 281 RVLVSKELR---DGSSAIRECDHKSSKMGVSTSVGGRTTHNPGTVEVSGFLGASKTLSPG 111
           R LV +E +   D SS+    D+K S +    S GG   H P   E +G+L     L   
Sbjct: 223 RFLVGQEKKTEHDVSSSCGSSDNKESML--VPSCGGERMHRPELEERTGYLEMDDLLEID 280

Query: 110 DTDLVV 93
           D  L++
Sbjct: 281 DLGLLI 286


>At2g41130.1 68415.m05080 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 253

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -2

Query: 239 IRECDHKSSKMGVSTSVGGRTTH-NPGTVEVSGFLGASKTLSPGDTDLVVVVKFDGLFCH 63
           +  C+ K+ K  +   V  R       T+E S    + +TL P +TD + V+ F      
Sbjct: 92  VLSCNSKTDKATLLAKVVQRVRELKQQTLETSD---SDQTLLPSETDEISVLHFGDYSND 148

Query: 62  DHGRQRHQYCCED 24
            H   +   CCED
Sbjct: 149 GHIIFKASLCCED 161


>At1g23730.1 68414.m02995 carbonic anhydrase, putative / carbonate
           dehydratase, putative similar to SP|P27140 Carbonic
           anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate
           dehydratase) {Arabidopsis thaliana}; contains Pfam
           profile PF00484: Carbonic anhydrase
          Length = 258

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 609 LQVITTPSAPARTEICDHWLHLCVSGAN 692
           L  I   +AP +TE  ++W+ +C    N
Sbjct: 156 LMAIEDNTAPTKTEFIENWIQICAPAKN 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,822
Number of Sequences: 28952
Number of extensions: 247491
Number of successful extensions: 857
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)