Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0888
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.068
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 28 1.1
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 27 3.4
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 27 3.4
SPAC17H9.16 |tom22||mitochondrial TOM complex subunit Tom22|Schi... 26 4.4
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.4
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 26 4.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 25 7.8
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 25 7.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.068
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = -3
Query: 627 IQTVTCWSATSL---SSSVTDNVRAQAEANQVDSTPIAASVVESQTKKLPRNCPTLGTPL 457
+ T C ++TS+ S+ VT + + + V STP+ + + T L + P TPL
Sbjct: 491 LTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPL 550
Query: 456 -TAVLYRPLARPRQSTTITLQSETASKA 376
T + P ST +T + T S +
Sbjct: 551 ATTNCTTSTSVPYTSTPVTSSNYTISSS 578
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 179 HPYVKERCKQPILAFHQT*PKQPSSFTNGNVNSIRNSNYN 298
HP + R + L F +T P PSS +G N++ N N
Sbjct: 141 HPPKRVRNEDDSLTFSKTSPVSPSSLKDGASNTVTNDASN 180
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -3
Query: 627 IQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQTKK 493
I+ CW+ +++++ T ++A E+N + S + +TKK
Sbjct: 348 IRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYADYKTKK 392
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 251 SFTNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRP 376
SF N NS+ N+N PL + GW S+ +S+ ++++ P
Sbjct: 12 SFPNYQENSL-NTNEEQTNPLESLRDGWASSNSSSSSSLLLP 52
>SPAC17H9.16 |tom22||mitochondrial TOM complex subunit
Tom22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 404 VIVVDWR-GLANGLYNTAVNGVPSVGQFLGNFLVWLSTTEAAIGV 535
++ V WR +A+G TA G+ + QF G + +ST+ +GV
Sbjct: 61 IVPVTWRVKIADGA-KTATTGLSKLAQFGGKSMWVISTSALLLGV 104
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 120 SKRIGLHLPHSDCCLQGSW 64
S + LPHSD L GSW
Sbjct: 290 SNSVSAKLPHSDSVLTGSW 308
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 644 PTGPAGSKP*PVGLPPACRPALPTTCAP 561
P P+ + P P LPP +PA P P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 413 VDWRGLANGLYNTAVNGVPSVGQFLGNFLVWLSTTEAAI 529
VDW +A+ + +T + +P + N W+S E+A+
Sbjct: 188 VDWESVADQIEDTDLKFLPGSVAKMSNIEEWISWMESAL 226
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = -1
Query: 644 PTGPAGSKP*PVGLPPACRPALP--TTCAPKLKP 549
PT P+ P LPP+ P+LP AP L P
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 84 SHYVEGVSRYVWMPDGEGVPHLVDLEEPADEDILMSR 194
S Y +G+S V + G+GV H+V + E + L+ R
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 272 NSIRNSNYNGNLPLFVIVHGWNSNGN 349
+SIRNS++N L LF V S+GN
Sbjct: 604 SSIRNSDFNSQLYLFETVGVLISSGN 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,199
Number of Sequences: 5004
Number of extensions: 62933
Number of successful extensions: 233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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