Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0888
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)                  45   7e-05
SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      33   0.29 
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.50 
SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)            30   2.0  
SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)                   29   4.7  
SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   6.2  
SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)                     28   6.2  
SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)                    28   8.1  
SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_30050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%)
 Frame = +2

Query: 251 SFTNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGL 430
           S  + +V  ++ S Y+G    FVI HG+  +G+++    +R ALL   D NV++ DW   
Sbjct: 84  SIDDSDVKKLKASTYDGKKRTFVIAHGYTESGSTSWVGHMRQALLQKDDVNVVITDWGPG 143

Query: 431 ANGLYNTAVNGVPSVG 478
           A+G+Y  A      VG
Sbjct: 144 ADGMYWQATANTRLVG 159


>SB_7713| Best HMM Match : Lipase (HMM E-Value=0.0064)
          Length = 131

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = +2

Query: 281 RNSN-YNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANG--LYNT 451
           RNS  + G+  L +I+HG+  +GN +   ++R  LL     NVI VDW+  A+G  LY+ 
Sbjct: 14  RNSTAFRGDRKLVLIIHGFMQSGNVSWIRVMRDELLKREPMNVITVDWQSGADGLNLYHV 73

Query: 452 AVNGVPSVGQFLGNFL 499
           A      VG  L   +
Sbjct: 74  AAGNTRVVGAQLAELI 89



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/24 (66%), Positives = 18/24 (75%)
 Frame = +1

Query: 535 RVHLIGFSLGAHVVGNAGRQAGGR 606
           RVHLIG SLGAHV G AG +  G+
Sbjct: 102 RVHLIGHSLGAHVAGYAGERLSGK 125


>SB_36636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -3

Query: 645 PNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQTKKLP-RNCPTL 469
           PNW S  +   CWS T+ SS +      ++   + +    A S   ++    P RNC +L
Sbjct: 40  PNWKSGSRVSACWSCTTSSSHMNGENNKESVNTEAEGNSKAKSRKRARETTAPKRNCLSL 99

Query: 468 GTPLTAVLY 442
              +  + Y
Sbjct: 100 KQRVKLINY 108


>SB_32805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +2

Query: 323 VHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNF-- 496
           VH   S+G +  N         VS C   V  W    +    T     P  G  +G+F  
Sbjct: 119 VHSDTSDGENLYNKGTTSG--TVSTCQDAVDSWYSEIDNYDYTDYTNHP--GGVIGHFTQ 174

Query: 497 LVWLSTTEAAIGVEST*LASAWARTLSV 580
           +VW STTE  +GV    +   W +T  V
Sbjct: 175 IVWKSTTEVGVGVAKA-IVDGWTKTYIV 201


>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 538 VHLIGFSLGAHVVGNAGRQ 594
           VH+IGFS GAHV G  GR+
Sbjct: 191 VHVIGFSFGAHVAGYVGRR 209


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 35/127 (27%), Positives = 48/127 (37%)
 Frame = +2

Query: 248 SSFTNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMIRPALLAVSDCNVIVVDWRG 427
           +S +N N+NS  NSN N N          NSN NS V   +     A +     V     
Sbjct: 158 NSNSNNNINSNSNSNINSNSN-----SNSNSNSNSTVTATVTATATATATVTATVTA-AA 211

Query: 428 LANGLYNTAVNGVPSVGQFLGNFLVWLSTTEAAIGVEST*LASAWARTLSVTLDDRLVAD 607
            A       V    +V           +T  AA  V  T  A+A A T++VT+   + A 
Sbjct: 212 SATAAVTATVTATVTVTVTATAATTVTATVTAATTVTVTVTATA-ATTVTVTVTATVTAT 270

Query: 608 QQVTVWI 628
              TV +
Sbjct: 271 VTATVTV 277


>SB_19823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +1

Query: 541 HLIGFSLGAHVVGNAGRQAG--GRPTG--YGLDPA 633
           +L+GFSLGAH+ G  GR+    G+      GLDPA
Sbjct: 690 YLVGFSLGAHISGYVGRRIAKTGQKLNRITGLDPA 724


>SB_13183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 49  LAMLSP*SLETTVTMWKV*ADTFGCLMARVFLTSLTWKNRPTKTSLC 189
           L+++   S +   T+ ++    FGC  A ++   + W  +P++ SLC
Sbjct: 87  LSLVGVASFQAPTTLTRLVLLAFGCGAAMLWFCGIVWSKKPSERSLC 133


>SB_43441| Best HMM Match : Lipase (HMM E-Value=8.19998e-41)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
 Frame = +1

Query: 541 HLIGFSLGAHVVGNAGRQAG--GRPTG--YGLDPA 633
           H IGFSLGAH+ G  G++    GR      GLDPA
Sbjct: 174 HSIGFSLGAHISGYVGQRLKRIGRHLDRITGLDPA 208



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
 Frame = +2

Query: 212 ILAFHQT*PKQPSSFTNGNVNSIRNSNYNGNLPLFVIVHGWNSNGNSAVNTMI------- 370
           +L + Q  P +    ++ +  +I  S++  +     IVHG+   G  +V+++I       
Sbjct: 55  LLLYTQASPDKYEVLSDADTATIEKSSFLPHRTTRFIVHGYA--GLDSVDSIIDLKGWWG 112

Query: 371 ---RPALLAVSDCNVIVVDWRGLANGLYNTAVNGVPSVGQFLGNFL 499
              +  LL  SD NVI+VDW   A   Y  AV     VG  +  F+
Sbjct: 113 IRMKDELLRKSDDNVIIVDWIRGAKIPYVRAVANTRLVGAQVAAFM 158


>SB_15037| Best HMM Match : zf-LSD1 (HMM E-Value=6.5)
          Length = 191

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +1

Query: 322 CPRLEQQRKLRCEHHDPPRLAGRLRLQ--RYCCGLAWSC 432
           CP       LR   H PP   GR+R+   R+C G+A  C
Sbjct: 33  CPLTAIVLGLRASVHLPPLRCGRVRVSTYRHCVGVACEC 71


>SB_23131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -3

Query: 654 LLPPNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQTKKL-PRNC 478
           L+P    +R   +TC  +T  SSS    V  Q        T + ++   S  KKL PR+ 
Sbjct: 12  LVPRQLTTRWSGITCMMSTHYSSSYKKLVPRQLTTRWASITCMMSTHYSSSYKKLVPRSL 71

Query: 477 PTLGTPLTAVLYRPLARP 424
            T  + +T ++    + P
Sbjct: 72  TTRWSGITCMMSTHYSSP 89


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
 Frame = -3

Query: 654  LLPPNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQTKKLPRNC- 478
            +LP N        T   ATS  SS T NV A +  + ++ST I ASV  S    +  N  
Sbjct: 763  ILPYNTTVIATPNTTRLATSTISSSTVNVSAISTTSSIEST-IMASVASSIQLNITSNTT 821

Query: 477  ----PTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEFPLLFQPWT 322
                 TL T  T+ ++     P  + T +  S T S  G    FT+   ++F   T
Sbjct: 822  MAVNDTLRTTSTSAVFPTTITPSPNIT-SYPSLTTSAVGN---FTSATSVVFDSTT 873


>SB_39797| Best HMM Match : VWA (HMM E-Value=6e-26)
          Length = 317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 508 EPDQKVAKELSDTGNSIDGS-VV*TVGKTTPVHNNNVAVGDGQQGGADHGVHSGV 347
           EPD+K  KE  D G  ID S  +    +  PV  N VA    Q   +  G H GV
Sbjct: 67  EPDKKPCKEAIDVGVIIDASESINNEQENFPVVLNFVANISKQYQVSQEGTHFGV 121


>SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)
          Length = 467

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = -3

Query: 684 ISSALRFRAWLLPPNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAA 520
           +S A+    WL+P +    +Q+V C++  +     TD+++  A A   ++ P+ A
Sbjct: 183 LSLAVAPGVWLMPSDLVINMQSVVCYN--NKLHKATDSMKLGANAINTETKPVGA 235


>SB_39747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 504 QTKKLPRNCPTLGTPLTAVLYRPLARPRQS-TTITLQSET-ASKAGRIMV 361
           Q   LPRN P L +  T V  R  +RP    TT++  S T  S+AG I V
Sbjct: 67  QRTSLPRNRPLLPSRETPVQKRNPSRPISGRTTVSALSRTPGSRAGGITV 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,813,407
Number of Sequences: 59808
Number of extensions: 555132
Number of successful extensions: 1809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1733
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)