Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0888
(686 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 28 0.096
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 24 1.6
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.1
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 2.7
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 2.7
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 2.7
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 2.7
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 3.6
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 22 4.8
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 22 4.8
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 4.8
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 6.3
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 6.3
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 22 6.3
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 27.9 bits (59), Expect = 0.096
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 477 PTLGTPLTAVLYRPLARPRQST 412
P +GTP T ++Y+P P Q++
Sbjct: 847 PVIGTPSTGMMYKPFLIPEQTS 868
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 23.8 bits (49), Expect = 1.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 248 SSFTNGNVNSIRNSNYNGNLPLFVIVHGWNSNGN 349
S+ T GN N+ ++N N N +G N NGN
Sbjct: 226 STITAGNANTNASNNNNNNNNNNNNNNGANDNGN 259
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 260 NGNVNSIRNSNYNGNL 307
NGN N N+N NG++
Sbjct: 257 NGNGNGASNNNNNGDM 272
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 427 TTPVHNNNVAVGDGQQGGAD 368
+ P +N + GDG++GGA+
Sbjct: 1052 SNPSYNFSSVSGDGEEGGAE 1071
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -2
Query: 427 TTPVHNNNVAVGDGQQGGAD 368
+ P +N + GDG++GGA+
Sbjct: 1048 SNPSYNFSSVSGDGEEGGAE 1067
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Frame = +2
Query: 236 PKQPSSFTNG----NVNSIRNSNYNGN 304
PK SS +N N N+ N+NYN N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNNYNNN 105
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Frame = +2
Query: 236 PKQPSSFTNG----NVNSIRNSNYNGN 304
PK SS +N N N+ N+NYN N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNNYNNN 105
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Frame = +2
Query: 236 PKQPSSFTNG----NVNSIRNSNYNGN 304
PK SS +N N N+ N+NYN N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNNYNNN 105
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.7
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Frame = +2
Query: 236 PKQPSSFTNG----NVNSIRNSNYNGN 304
PK SS +N N N+ N+NYN N
Sbjct: 79 PKIISSLSNNYKYSNYNNYNNNNYNNN 105
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 3.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = +2
Query: 191 KERCKQPILAFHQT*PKQPSSFTNGNV---NSIRNSNYNGN 304
KER + PK SS +N + N+ N+NYN N
Sbjct: 297 KERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNN 337
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 260 NGNVNSIRNSNYNGNLPLF 316
N N N+ N+NYN L+
Sbjct: 335 NNNYNNYNNNNYNNYKKLY 353
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 260 NGNVNSIRNSNYNGN 304
N N N+ N+NYN N
Sbjct: 98 NNNYNNNYNNNYNNN 112
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.2 bits (45), Expect = 4.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 260 NGNVNSIRNSNYNGN 304
N N N+ N+NYN N
Sbjct: 98 NNNYNNNYNNNYNNN 112
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 22.2 bits (45), Expect = 4.8
Identities = 10/41 (24%), Positives = 17/41 (41%)
Frame = +1
Query: 109 DTFGCLMARVFLTSLTWKNRPTKTSLCQGTVQTTNTGFSPD 231
D C++ + + K+ P + C V TT +PD
Sbjct: 1440 DETSCMLDKTRAQTFDGKDYPLRLGPCWHAVMTTYPRINPD 1480
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 21.8 bits (44), Expect = 6.3
Identities = 5/23 (21%), Positives = 13/23 (56%)
Frame = +1
Query: 241 TTIKFYKWQCQLYPELELQWKPA 309
+ ++ + W ++ + L WKP+
Sbjct: 87 SVMELHSWMTLMWTDSHLSWKPS 109
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 21.8 bits (44), Expect = 6.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +2
Query: 260 NGNVNSIRNSNYNGN 304
N N N+ N+NYN N
Sbjct: 332 NYNNNNYNNNNYNNN 346
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 21.8 bits (44), Expect = 6.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 26 GWLNSIVFWQCYP 64
GW + +F+Q YP
Sbjct: 23 GWWKNAIFYQVYP 35
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,746
Number of Sequences: 438
Number of extensions: 5032
Number of successful extensions: 29
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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