Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0888
(686 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g37925.1 68415.m04655 copper transporter family protein simil... 31 0.95
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 29 2.2
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 29 2.2
At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138... 29 2.9
At2g04170.1 68415.m00402 meprin and TRAF homology domain-contain... 29 2.9
At1g77500.1 68414.m09025 expressed protein contains Pfam domains... 29 2.9
At5g45500.1 68418.m05589 expressed protein weak similarity to re... 28 5.0
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 28 6.7
At1g26390.1 68414.m03219 FAD-binding domain-containing protein s... 28 6.7
At1g07440.1 68414.m00794 tropinone reductase, putative / tropine... 28 6.7
At4g28680.1 68417.m04098 tyrosine decarboxylase, putative simila... 27 8.8
At3g55160.1 68416.m06126 expressed protein 27 8.8
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 27 8.8
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 27 8.8
>At2g37925.1 68415.m04655 copper transporter family protein similar
to SP|Q39065 Copper transporter 1 (COPT1) {Arabidopsis
thaliana}; contains Pfam profile PF04145: Ctr copper
transporter family; supporting cDNA
gi|18496855|gb|AF466372.1|
Length = 145
Score = 30.7 bits (66), Expect = 0.95
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Frame = +2
Query: 317 VIVHGWNSNGNSAVNTMIRPALLAVS-----DCNVIVVDWRGLANGLYNTAV 457
V+V WN+ + T RP+LL + +C V+ W G G+Y A+
Sbjct: 8 VVVEAWNTTTTTQTQTPHRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALAL 59
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 681 SSALRFRAWLLPPNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQ 502
S AL A LL N I+ CW+ +++++ D ++ EAN + E
Sbjct: 325 SGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFD 384
Query: 501 TKK 493
KK
Sbjct: 385 IKK 387
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -3
Query: 681 SSALRFRAWLLPPNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQ 502
S AL A LL N I+ CW+ +++++ D ++ EAN + E
Sbjct: 325 SGALPCLANLLTQNHKKSIKKEACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFD 384
Query: 501 TKK 493
KK
Sbjct: 385 IKK 387
>At3g07900.1 68416.m00965 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown; previously annotated as
'auxin-independent growth promoter -related' based on
similarity to axi 1 protein (GB:X80301) (GI:559920) from
[Nicotiana tabacum], which, due to scienitific fraud was
retracted. Retraction in: Schell J. EMBO J 1999 May
17;18(10):2908. PMID:10400497.
Length = 579
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -3
Query: 525 AASVVESQTKKLPRNCPTLGTPLTAVLYRPLARPRQSTTITLQSETASKAGRIMVFTAEF 346
A S + S +KL CP +T +L R L PR + E + T+EF
Sbjct: 393 AKSSMTSNERKLAGLCPLNAKEVTRLL-RALGAPRDARIYWAGGEPLGGKEALKPLTSEF 451
Query: 345 PLLFQPWTI 319
P L+ + I
Sbjct: 452 PHLYNKYDI 460
>At2g04170.1 68415.m00402 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to NtN2 [Medicago truncatula] GI:3776084; contains Pfam
profile PF00917: MATH domain
Length = 420
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Frame = +1
Query: 550 GFSLGAHVVGNAGRQAGGR-PTGYGLDPAGPVGW*QP-SPEP 669
GF G G G GGR P G G P GP W P P P
Sbjct: 39 GFGPGGPGFGPGGPGFGGRGPRGPGFGPRGPGPWSGPRGPRP 80
>At1g77500.1 68414.m09025 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 879
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 202 QTTNTGFSPDVTKTTIKFYKWQCQLYPELE 291
Q N GF+ +++ T K Y W+ +LY E++
Sbjct: 532 QDVNGGFNGNLSSTLEKLYAWEKKLYKEVK 561
>At5g45500.1 68418.m05589 expressed protein weak similarity to
resistance complex protein I2C-2 [Lycopersicon
esculentum] GI:2258317
Length = 489
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 190 QGTVQTTNTGFSPDVTKTTIKFYKWQCQLYPELELQWKPASLCYCPRLEQQRKLRC 357
+G ++ T G S + K + + P+L+++W+ S Y P L+ K +C
Sbjct: 412 KGGIKLTGFGKSLPSQNSKCKVTVLRLKFLPKLKVEWRDLSKRYFPELKFLEKYQC 467
>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 519
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = -3
Query: 654 LLPPNWPSRIQTVTCWSATSLSSSVTDNVRAQAEANQVDSTPIAASVVESQTKK 493
LL N I+ CW+ +++++ + + +++ +AN + S A E KK
Sbjct: 332 LLTQNHMRGIRREACWTISNITAGLEEQIQSVIDANLIPSLVNLAQHAEFDIKK 385
>At1g26390.1 68414.m03219 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 530
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 2 QHEAPTSAGWLNSIVFWQCYP 64
+HE WLNS +FW YP
Sbjct: 330 KHEDCQEMSWLNSTLFWADYP 350
>At1g07440.1 68414.m00794 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 266
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 579 TDNVRAQAEANQVDSTPIAASVVESQTKKLPRNCPTLG 466
+D +RA A A V +TP+A +V + + KK+ + LG
Sbjct: 184 SDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLG 221
>At4g28680.1 68417.m04098 tyrosine decarboxylase, putative similar
to SP|P54768 Tyrosine/DOPA decarboxylase 1 [Includes:
DOPA decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
decarboxylase (EC 4.1.1.25)] {Papaver somniferum},
SP|Q06086 Tyrosine decarboxylase 2 (EC 4.1.1.25)
{Petroselinum crispum}; contains Pfam profile PF00282:
Pyridoxal-dependent decarboxylase conserved domain
Length = 545
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 248 SSFTNGNVNSIRNSNYNGN 304
+ +TNGN ++ N NYNGN
Sbjct: 22 NGYTNGNGHTNGNGNYNGN 40
>At3g55160.1 68416.m06126 expressed protein
Length = 2149
Score = 27.5 bits (58), Expect = 8.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 29 WLNSIVFWQCYPHDPWRQQ 85
WL+S ++ CYP P+R++
Sbjct: 762 WLSSFLYLSCYPSAPYRRK 780
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +3
Query: 390 SPTATLLLWTG---VVLPTVYTTLPSMEFPVSDSSLATFWSGSQQRR 521
SP L W G + LP+ + +E +S S L W G++Q R
Sbjct: 624 SPRIRSLKWFGYQNICLPSTFNPEFLVELDMSSSKLRKLWEGTKQLR 670
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -1
Query: 644 PTGPAGSKP*PVGLPPACRPALPTTCAPKLKP 549
PT P S P P PP P PTT P P
Sbjct: 120 PTKPPPSTPKPPTKPPPSTPKPPTTKPPPSTP 151
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,448,001
Number of Sequences: 28952
Number of extensions: 364822
Number of successful extensions: 1350
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -