Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0887
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 152 2e-37
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 101 3e-22
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 79 2e-15
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 60 1e-09
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 29 2.1
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_37933| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 152 bits (368), Expect = 2e-37
Identities = 72/85 (84%), Positives = 75/85 (88%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQIIPT RR LYAC+LTA+P L+EPVY EIQCPE AVGGIYGVLNRRRG V EES VA
Sbjct: 693 GGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVA 752
Query: 182 GTPMFIVKAYLPVNESFGFTADLRS 256
GTPMFIVKAYLPV ESFGFTADLRS
Sbjct: 753 GTPMFIVKAYLPVMESFGFTADLRS 777
Score = 71.7 bits (168), Expect = 4e-13
Identities = 33/46 (71%), Positives = 35/46 (76%)
Frame = +1
Query: 259 TGGQAFPQCVFDHWQVLPGDPCEPHSKPYNVVQVTRKRKRLKVGLP 396
TGGQAFPQCVFDHWQVLPGD + S P VV TRKRK LK G+P
Sbjct: 779 TGGQAFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 101 bits (243), Expect = 3e-22
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQIIPT RR Y+ L A PRLMEP + E+Q P V +Y VL RRRGHV +++ V
Sbjct: 673 GGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVP 732
Query: 182 GTPMFIVKAYLPVNESFGFTADLRS 256
G+P++ +KA++P +SFGF DLR+
Sbjct: 733 GSPLYTIKAFIPAIDSFGFETDLRT 757
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 256 NTGGQAFPQCVFDHWQVLPGDPCE 327
+T GQAF VF HWQ++PGDP +
Sbjct: 758 HTQGQAFCLSVFHHWQIVPGDPLD 781
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 79.4 bits (187), Expect = 2e-15
Identities = 33/67 (49%), Positives = 47/67 (70%)
Frame = +2
Query: 56 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 235
A PRLMEP + E+Q P V +Y VL RRRGHV +++ V G+P++ +KA++P +SFG
Sbjct: 1 ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60
Query: 236 FTADLRS 256
F DLR+
Sbjct: 61 FETDLRT 67
Score = 37.5 bits (83), Expect = 0.008
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 256 NTGGQAFPQCVFDHWQVLPGDPCE 327
+T GQAF VF HWQ++PGDP +
Sbjct: 68 HTQGQAFCLSVFHHWQIVPGDPLD 91
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +2
Query: 59 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 235
QP RLM +Y C IQ +G +Y V+ RR G V E G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Query: 236 FTADLR 253
F+ ++R
Sbjct: 467 FSEEIR 472
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 259 TGGQAFPQCVFDHWQVLPGDP 321
T G A PQ +F HW+ + DP
Sbjct: 475 TSGLANPQLMFSHWEAIDLDP 495
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 119 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRS 256
G + +NRR G V G F + A +P+N+ FG+ +LRS
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRS 198
>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1117
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 8 QIIPTTRRCLYACLLTAQPRLMEPVYL 88
+I+PT RR + LLT+ +PVY+
Sbjct: 544 EIVPTQRRKAFVALLTSTVNAKQPVYI 570
>SB_37933| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 237 LLPICVQHRRTGLPAVRIRPLAGPPWRPVRTS--QQALQRCTGNEKEETIEGRSP 395
+ P C + G A + GP + V QQ L RC G+ +++ +E R+P
Sbjct: 221 IAPRCRSPKILGPSAAKKASTCGPEYDMVLAPDVQQELLRCMGDGEDQHLEARTP 275
>SB_48629| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 262 GGQAFPQCVFDHWQVLPGDPC---EPHSKPYNVVQVTRKRK 375
G AFPQ ++H + P P EP + P+N+++V K++
Sbjct: 46 GFNAFPQSSYNH--ISPPHPYSSPEPRAPPHNILEVPTKQE 84
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,662,547
Number of Sequences: 59808
Number of extensions: 398858
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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