Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0887
(581 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 161 2e-40
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 161 2e-40
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 101 3e-22
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 101 3e-22
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 48 6e-06
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 35 0.048
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 4.2
U70844-3|AAB09093.2| 209|Caenorhabditis elegans Hypothetical pr... 27 9.7
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 27 9.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 161 bits (392), Expect = 2e-40
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV
Sbjct: 712 GGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVT 771
Query: 182 GTPMFIVKAYLPVNESFGFTADLRS 256
GTPMF+VKAYLPVNESFGFTADLRS
Sbjct: 772 GTPMFVVKAYLPVNESFGFTADLRS 796
Score = 81.0 bits (191), Expect = 6e-16
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = +1
Query: 256 NTGGQAFPQCVFDHWQVLPGDPCEPHSKPYNVVQVTRKRKRLKVGLP 396
NTGGQAFPQCVFDHWQVLPGDP E +KP +V TRKRK LK G+P
Sbjct: 797 NTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 161 bits (392), Expect = 2e-40
Identities = 74/85 (87%), Positives = 78/85 (91%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV
Sbjct: 712 GGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVT 771
Query: 182 GTPMFIVKAYLPVNESFGFTADLRS 256
GTPMF+VKAYLPVNESFGFTADLRS
Sbjct: 772 GTPMFVVKAYLPVNESFGFTADLRS 796
Score = 81.0 bits (191), Expect = 6e-16
Identities = 35/47 (74%), Positives = 38/47 (80%)
Frame = +1
Query: 256 NTGGQAFPQCVFDHWQVLPGDPCEPHSKPYNVVQVTRKRKRLKVGLP 396
NTGGQAFPQCVFDHWQVLPGDP E +KP +V TRKRK LK G+P
Sbjct: 797 NTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 101 bits (243), Expect = 3e-22
Identities = 44/84 (52%), Positives = 57/84 (67%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV ++ +
Sbjct: 809 GGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMP 868
Query: 182 GTPMFIVKAYLPVNESFGFTADLR 253
G+PM+ + AY+PV +SFGF DLR
Sbjct: 869 GSPMYTISAYIPVMDSFGFETDLR 892
Score = 35.9 bits (79), Expect = 0.021
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 256 NTGGQAFPQCVFDHWQVLPGDPCE 327
+T GQAF F HWQ++PGDP +
Sbjct: 894 HTQGQAFCMSAFHHWQLVPGDPLD 917
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 101 bits (243), Expect = 3e-22
Identities = 44/84 (52%), Positives = 57/84 (67%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQ+IPT RRC Y+ L A PRLMEP Y E+ P V +Y VL +RRGHV ++ +
Sbjct: 684 GGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMP 743
Query: 182 GTPMFIVKAYLPVNESFGFTADLR 253
G+PM+ + AY+PV +SFGF DLR
Sbjct: 744 GSPMYTISAYIPVMDSFGFETDLR 767
Score = 35.9 bits (79), Expect = 0.021
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 256 NTGGQAFPQCVFDHWQVLPGDPCE 327
+T GQAF F HWQ++PGDP +
Sbjct: 769 HTQGQAFCMSAFHHWQLVPGDPLD 792
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 47.6 bits (108), Expect = 6e-06
Identities = 26/84 (30%), Positives = 41/84 (48%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
GGQ++ + A RL+ +Y C + A+G ++ VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINE 791
Query: 182 GTPMFIVKAYLPVNESFGFTADLR 253
T +F V + +PV ESF F LR
Sbjct: 792 ATNLFEVVSLMPVVESFSFCDQLR 815
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 259 TGGQAFPQCVFDHWQVLPGDP 321
T G A Q F HWQV+ DP
Sbjct: 818 TSGMASAQLQFSHWQVIDEDP 838
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 34.7 bits (76), Expect = 0.048
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +2
Query: 68 LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 247
L+EP+ E P G + L +R + G I +A P+++ FG+T++
Sbjct: 642 LLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSE 699
Query: 248 LRSTPADRPSRS-AYSTIGRSSLETRANLTA 337
LRS + S YS ++LE + + A
Sbjct: 700 LRSLTEGKGEFSMEYSRYAPTTLEAQDRVQA 730
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 259 TGGQAFPQCVFDHWQVLPGDP 321
T G A Q F HWQV+ DP
Sbjct: 629 TSGMASAQLQFSHWQVIDEDP 649
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +2
Query: 2 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 148
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
>U70844-3|AAB09093.2| 209|Caenorhabditis elegans Hypothetical
protein ZK154.1 protein.
Length = 209
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 115 CGWYLRCTEQTSWSRFRRVPGGRYTYV 195
C W +C E TS+S FR GR T+V
Sbjct: 48 CEWRKQCNEHTSFSTFR----GRRTFV 70
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 27.1 bits (57), Expect = 9.7
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +2
Query: 2 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 163
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 164 EESQVAGTPMFIVKAYLPVNESFGFTADLRS 256
T + + A LP++E+ + +R+
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRT 655
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,612,188
Number of Sequences: 27780
Number of extensions: 292169
Number of successful extensions: 683
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -