Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0887
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...   127   6e-30
At1g06220.2 68414.m00656 elongation factor Tu family protein sim...   103   1e-22
At1g06220.1 68414.m00655 elongation factor Tu family protein sim...   103   1e-22
At5g25230.1 68418.m02991 elongation factor Tu family protein tra...   100   6e-22
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    74   6e-14
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati...    48   3e-06
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    48   3e-06
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    45   4e-05
At5g13650.2 68418.m01585 elongation factor family protein contai...    33   0.11 
At5g13650.1 68418.m01584 elongation factor family protein contai...    33   0.11 
At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634...    29   2.3  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    27   6.9  
At2g35490.1 68415.m04347 plastid-lipid associated protein PAP, p...    27   6.9  
At2g40070.1 68415.m04923 expressed protein                             27   9.1  

>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
           putative similar to ELONGATION FACTOR 2 GB:O14460 from
           [Schizosaccharomyces pombe]
          Length = 843

 Score =  127 bits (306), Expect = 6e-30
 Identities = 56/85 (65%), Positives = 71/85 (83%)
 Frame = +2

Query: 2   GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 181
           GGQ+IPT RR +YA  +TA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q  
Sbjct: 703 GGQVIPTARRVIYASQITAKPRLLEPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRP 762

Query: 182 GTPMFIVKAYLPVNESFGFTADLRS 256
           GTP++ +KAYLPV ESFGF++ LR+
Sbjct: 763 GTPLYNIKAYLPVVESFGFSSQLRA 787



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 24/42 (57%), Positives = 30/42 (71%)
 Frame = +1

Query: 259 TGGQAFPQCVFDHWQVLPGDPCEPHSKPYNVVQVTRKRKRLK 384
           T GQAFPQCVFDHW+++  DP EP ++   +V   RKRK LK
Sbjct: 789 TSGQAFPQCVFDHWEMMSSDPLEPGTQASVLVADIRKRKGLK 830


>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score =  103 bits (246), Expect = 1e-22
 Identities = 51/83 (61%), Positives = 57/83 (68%)
 Frame = +2

Query: 5    GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 184
            GQ+IPT RR  Y+  L A PRLMEPVY  EIQ P   V  IY VL+RRRGHV  +    G
Sbjct: 820  GQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPG 879

Query: 185  TPMFIVKAYLPVNESFGFTADLR 253
            TP +IVKA+LPV ESFGF  DLR
Sbjct: 880  TPAYIVKAFLPVIESFGFETDLR 902



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 253 FNTGGQAFPQCVFDHWQVLPGDPCE 327
           ++T GQAF   VFDHW ++PGDP +
Sbjct: 903 YHTQGQAFCLSVFDHWAIVPGDPLD 927


>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score =  103 bits (246), Expect = 1e-22
 Identities = 51/83 (61%), Positives = 57/83 (68%)
 Frame = +2

Query: 5    GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 184
            GQ+IPT RR  Y+  L A PRLMEPVY  EIQ P   V  IY VL+RRRGHV  +    G
Sbjct: 820  GQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPG 879

Query: 185  TPMFIVKAYLPVNESFGFTADLR 253
            TP +IVKA+LPV ESFGF  DLR
Sbjct: 880  TPAYIVKAFLPVIESFGFETDLR 902



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 253 FNTGGQAFPQCVFDHWQVLPGDPCE 327
           ++T GQAF   VFDHW ++PGDP +
Sbjct: 903 YHTQGQAFCLSVFDHWAIVPGDPLD 927


>At5g25230.1 68418.m02991 elongation factor Tu family protein
            translation Elongation Factor 2, Schizosaccharomyces
            pombe, PIR:T39902
          Length = 973

 Score =  100 bits (240), Expect = 6e-22
 Identities = 50/83 (60%), Positives = 57/83 (68%)
 Frame = +2

Query: 5    GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 184
            GQ+IPT RR  Y+  L A PRLMEPVY  EIQ P   V  IY VL+RRRG+V  +    G
Sbjct: 806  GQMIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVTSDVPQPG 865

Query: 185  TPMFIVKAYLPVNESFGFTADLR 253
            TP +IVKA+LPV ESFGF  DLR
Sbjct: 866  TPAYIVKAFLPVIESFGFETDLR 888



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = +1

Query: 253 FNTGGQAFPQCVFDHWQVLPGDPCE 327
           ++T GQAF   VFDHW ++PGDP +
Sbjct: 889 YHTQGQAFCLSVFDHWAIVPGDPLD 913


>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 32/83 (38%), Positives = 50/83 (60%)
 Frame = +2

Query: 5    GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 184
            GQ++   +    A +L   PR++E +Y CE+      +G +Y VL+RRR  + +E    G
Sbjct: 853  GQVMTAVKDACRAAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEG 912

Query: 185  TPMFIVKAYLPVNESFGFTADLR 253
            + +F V AY+PV+ESFGF  +LR
Sbjct: 913  SSLFTVHAYVPVSESFGFADELR 935


>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
           similar to SP|P25039 Elongation factor G 1,
           mitochondrial precursor (mEF-G-1) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03764: Elongation factor
           G domain IV, PF00679: Elongation factor G C-terminus
          Length = 754

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +2

Query: 44  CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 223
           C   A+P ++EPV L E++ P    G + G +N+R+G +    Q       ++ A +P+N
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLN 706

Query: 224 ESFGFTADLRS 256
             FG++  LRS
Sbjct: 707 NMFGYSTSLRS 717


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +2

Query: 44  CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 223
           C   A+P ++EPV L E++ P    G + G +N+R+G +    Q       ++ A +P+N
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLN 706

Query: 224 ESFGFTADLRS 256
             FG++  LRS
Sbjct: 707 NMFGYSTSLRS 717


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 24/74 (32%), Positives = 38/74 (51%)
 Frame = +2

Query: 56  AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 235
           A PR++EP+   E+  PE  +G + G LN RRG +       G  + +V + +P+ E F 
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDSLVPLAEMFQ 741

Query: 236 FTADLRSTPADRPS 277
           + + LR     R S
Sbjct: 742 YVSTLRGMTKGRAS 755


>At5g13650.2 68418.m01585 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 676

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 65  RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 235
           +L+EP  +  ++ PE  +G +  +L +RRG +F+   V       ++  +P     G
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLG 529


>At5g13650.1 68418.m01584 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 675

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/57 (24%), Positives = 28/57 (49%)
 Frame = +2

Query: 65  RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 235
           +L+EP  +  ++ PE  +G +  +L +RRG +F+   V       ++  +P     G
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLG 528


>At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634:
           Arabidopsis thaliana protein of unknown function
           (DUF794)
          Length = 340

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2

Query: 361 LPVQRCRACCEVRTGLQG 308
           +PV RCR C EV  G QG
Sbjct: 61  VPVHRCRLCAEVHIGKQG 78


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 148 SWSRFRRVPGGRY-TYVHCEGL 210
           S+ R R +PGGRY +++H +GL
Sbjct: 123 SYGRGRELPGGRYMSFIHGDGL 144


>At2g35490.1 68415.m04347 plastid-lipid associated protein PAP,
           putative similar to plastid-lipid associated protein
           PAP3 [Brassica rapa] GI:14248552; contains Pfam profile
           PF04755: PAP_fibrillin
          Length = 376

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 286 VFDHWQVLPGDPCEPHSKPYNV 351
           V D W   PGD  EP S+P NV
Sbjct: 71  VTDEWGEKPGDANEPDSQPDNV 92


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 254 STPADRPSRSAYSTIGRSSLETR---ANLTASPTT 349
           STP  RP+     TI RSS  TR   A+ +A+ TT
Sbjct: 296 STPTSRPTLPPSKTISRSSTPTRRPIASASAATTT 330


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,618,573
Number of Sequences: 28952
Number of extensions: 261252
Number of successful extensions: 604
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)