Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0886
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal prote...    91   6e-19
AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical...    31   0.65 
AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical...    31   0.65 
Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in b...    27   8.0  
U00049-1|AAC47053.2|  288|Caenorhabditis elegans Serpentine rece...    27   8.0  

>U41264-2|AAA82422.1|  124|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 33 protein.
          Length = 124

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 42/72 (58%), Positives = 52/72 (72%)
 Frame = +1

Query: 256 YAGKHCVYVYRAKKRTPIPGGPRGKKTKLRAIWGKVTRPHGNSGSVRAKFKSNLPAQAMG 435
           YAGK  VY+Y+A  +T   G      T+ RAIWGK+TRPHGN+G+VRAKF  N+P  A+G
Sbjct: 55  YAGKRVVYLYKAHNKTLKTG--HTVATRTRAIWGKITRPHGNAGAVRAKFHHNIPPSALG 112

Query: 436 HRIRVMLYPSRI 471
            RIRV+LYPS I
Sbjct: 113 KRIRVLLYPSNI 124



 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 29/49 (59%), Positives = 37/49 (75%)
 Frame = +2

Query: 110 VLRKASKPRHGRLYAKAVFTGYKRGLRNQHENTALLKVEGAKDRNDAVF 256
           V R+ S P  GRLY KA+FTG+KRGLR Q E+T+LLK+EG  ++ DA F
Sbjct: 6   VARRPSAPTTGRLYVKAIFTGFKRGLRTQSEHTSLLKLEGVFNKEDAGF 54


>AC006708-12|AAT81173.1|  908|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9b protein.
          Length = 908

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 411  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASIKTASLRS 235
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +   +  S
Sbjct: 839  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARLILRTTTS 898

Query: 234  FAP 226
              P
Sbjct: 899  TPP 901


>AC006708-11|AAF60426.2| 1019|Caenorhabditis elegans Hypothetical
            protein Y110A7A.9a protein.
          Length = 1019

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -2

Query: 411  RLELGSDTARVAMWAGHLAPDSTQLGFFATGTSGNWCPLLSSV-HIDAMLASIKTASLRS 235
            ++ L   T   + W GHLA ++ Q+   A  +  NW  ++ +    DA+LA +   +  S
Sbjct: 950  KMGLDDPTEVESKWIGHLADEAKQIRVLAEASRRNWPDVVEATSSADAILARLILRTTTS 1009

Query: 234  FAP 226
              P
Sbjct: 1010 TPP 1012


>Z81529-2|CAB04298.2|  133|Caenorhabditis elegans Hypothetical
           protein F35E8.2 protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
 Frame = +3

Query: 129 SPATAGCTQRPYSQDISVVYATSTRTP--LSSRLKEQKTVMMQSLCWQALRLCVQS*EED 302
           +PA  GC+        +V+Y         LSS   +Q+ +  QS C +   LC Q+   +
Sbjct: 34  TPAATGCSNVISDSSCAVLYPAPVPADGYLSSGKDQQRPLASQSSCPKKCGLCCQTSAYN 93

Query: 303 TNSRRSPWQKNQAACYLGQGDPPTWQ 380
             +   P + N A+    Q   P W+
Sbjct: 94  CPNVAFP-RLNCASITSSQCQSPAWR 118


>Z35719-1|CAA84800.1|  296|Caenorhabditis elegans Hypothetical
           protein F17C8.2 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 470 ILEGYSITRILCPIAWAGRLDLNLARTLPELP 375
           +L+G S+ RI    AW   +D+ +  T P  P
Sbjct: 38  VLDGVSVFRIETDAAWTDMMDIQITVTPPSKP 69


>U80455-10|AAB37887.2|  395|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 11 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = +3

Query: 111 SFAKHQSPATAGCTQRPYSQDISVVYATSTRTPLSSRLKEQKTVMMQSLCWQALR-LCVQ 287
           S A+ Q P++ GC Q+   Q  +    +S     S   ++Q     QS C    +  C Q
Sbjct: 60  SCAQAQQPSSCGCAQQYQQQQCAPTCQSSCEQ--SCVAQQQPIAQCQSSCSSTCQSACAQ 117

Query: 288 S*EEDTNSRRSPWQKNQAAC 347
             +    +++   Q  QAAC
Sbjct: 118 PVQLQQPAQQQCQQDCQAAC 137


>U00049-1|AAC47053.2|  288|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 1 protein.
          Length = 288

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 174 ISVVYATSTRTPLSSRLKEQKTVMMQSLCWQALRLCV 284
           I++V AT+T     SR+K++     + LCW ++ L V
Sbjct: 206 ITIVVATTTMLIKMSRMKKRIRESERRLCWASVYLSV 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,064,385
Number of Sequences: 27780
Number of extensions: 241591
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)