Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0883
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.53 
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    27   3.7  
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo...    27   3.7  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    26   4.9  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   8.6  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    25   8.6  

>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +2

Query: 533 FNCIQDLTYMDMFVSEVLRLWTPVVGMDRLCVQ-DYNLGRANKNATKDFILRKGEGLSIP 709
           FNC +  +Y DMF S+  R +T  +  ++L ++ D  LG   K    + + +KG   ++ 
Sbjct: 17  FNCERRFSYFDMFRSK--RKFTSGILTEQLALKLDSELGYV-KQVLDETLPKKGYEKALH 73

Query: 710 TWSIHHNP 733
           ++ IH +P
Sbjct: 74  SFIIHEDP 81


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 237 SFTDGGKQGKLSYDEKSTKEADTGFATVEESDVGKKTINRIWSNTDLIA 383
           +F D  K G+L +  K TK+ D  + T E++   K  +++  S+  ++A
Sbjct: 134 AFRDSQKPGRLPFAYKHTKQVDLFYET-EDNSRDKIRVSKNQSDNQVLA 181


>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 151 DETGHFFTDLVLRTMEDREVKEIVRPDMIHLLMEANKANF 270
           DET  FF  + + ++ D EVK+ +    + L + A K++F
Sbjct: 256 DETSQFFDGVYVGSISDPEVKDRIESTDLLLSIGALKSDF 295


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 562 HVSQILNTVKIEFPPSLR 509
           ++ Q+ NT+ IEFPP  R
Sbjct: 189 NIEQLFNTMNIEFPPHYR 206


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 24/88 (27%), Positives = 37/88 (42%)
 Frame = -2

Query: 389  CLGNQIGVGPDSIDSLFSDIGFFDCCKXXXXXXXXXFIIRKFALFASISK*IISGLTISL 210
            CL N I + PD I+SL SD     C              +K +L   I +    G +  L
Sbjct: 1384 CLKNNIEIIPDKINSLCSDCLKNPCATISKAVTQHNAYNKKLSLLFDICR----GCS-KL 1438

Query: 209  TSRSSIVLRTKSVKKCPVSSDRSLALNF 126
            +S   ++ ++ S   C V  DR+   N+
Sbjct: 1439 SSSDPVLCKSNS---CKVYYDRAKTENY 1463


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 375 LIAQATLFFVAGFETISSAMSFALHELALNPEIQDRL 485
           L++   + F+   E I+     A+HE+ +NP   DR+
Sbjct: 32  LVSGLIVIFIVLMEWINYRRVIAVHEIIVNPSHGDRM 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,246,713
Number of Sequences: 5004
Number of extensions: 67625
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)