Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0883
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    51   1e-08
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    31   0.009
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.0  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   4.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   5.3  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 50.8 bits (116), Expect = 1e-08
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 375 LIAQATLFFVAGFETISSAMSFALHELALNPEIQDRLVQEI 497
           + AQA +FF+AGFET S+ MS AL+ELALN ++Q +L +EI
Sbjct: 294 IAAQAFVFFLAGFETSSTTMSNALYELALNQDVQKKLREEI 334



 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 28/87 (32%), Positives = 42/87 (48%)
 Frame = +1

Query: 1   VKVDSHTNEENQFYLMGRDMADFGFRKIMVFLGYSSFPKLMKKFNAKLLSDETGHFFTDL 180
           + + S TNE ++F  MGR++    F  +M        P+L       +       FFT +
Sbjct: 193 IDMSSMTNENSEFRRMGREVFAVNFMNVMRMKLKQFMPRLYDLLGYVMPDRTFAPFFTRV 252

Query: 181 VLRTMEDREVKEIVRPDMIHLLMEANK 261
           V  T++ R    IVRPD I++LME  K
Sbjct: 253 VTDTIKYRNDNNIVRPDFINMLMELQK 279



 Score = 32.7 bits (71), Expect = 0.004
 Identities = 20/77 (25%), Positives = 36/77 (46%)
 Frame = +2

Query: 512 KTGGKFDFNCIQDLTYMDMFVSEVLRLWTPVVGMDRLCVQDYNLGRANKNATKDFILRKG 691
           K   +  ++ I+++ Y+D    E LR++ P   + R  + DY       N TK   + K 
Sbjct: 340 KNNKELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDYTF-----NDTK-ITIPKE 393

Query: 692 EGLSIPTWSIHHNPEYY 742
             + IP ++IH +   Y
Sbjct: 394 MKIWIPAFAIHRDSAIY 410


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 31.5 bits (68), Expect = 0.009
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +3

Query: 390 TLFFVAGFETISSAMSFALHELALNPEIQDRLVQEIKE 503
           T+ F  G +T +S  SF L  +  +P+IQ++++QE+ E
Sbjct: 344 TIMF-EGHDTTASGSSFFLAVMGCHPDIQEKVIQELDE 380


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 102 VTEKYHNLSESKIRHVP 52
           VT +Y N+ E   RH+P
Sbjct: 412 VTSQYKNIREDDARHIP 428



 Score = 23.4 bits (48), Expect = 2.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 69  WIPKDYGISRLLFVPEIN 122
           W P++YG   +L+VP  N
Sbjct: 97  WNPEEYGGVEMLYVPSEN 114


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 69  WIPKDYGISRLLFVP 113
           W PK+YG  ++L VP
Sbjct: 92  WEPKEYGGVKMLHVP 106


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 69  WIPKDYGISRLLFVP 113
           W PK+YG  ++L VP
Sbjct: 92  WEPKEYGGVKMLHVP 106


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 22  NEENQFYLMGRDMADFGFRKIMVFLGYSSF 111
           NE++   L+  D   + +R   V +G+S+F
Sbjct: 373 NEDDNTSLVSLDKKQYTWRHTSVLIGWSAF 402


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 69  WIPKDYGISRLLFVP 113
           W PK+YG   +L VP
Sbjct: 88  WDPKEYGGVEMLHVP 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,135
Number of Sequences: 438
Number of extensions: 4577
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)