Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0875
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   3.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   7.5  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   7.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 240 LAYSCGSTFTNSGGVVHNVNRIIIHPN 320
           LAY C       G + ++VN++I   N
Sbjct: 284 LAYLCDKVQLKIGEIKYSVNKLIFRSN 310


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 684 EQTPTRTRLWRRGPPESPWHWSRPPTSKT 598
           ++T   TRLW R    +   WS P    T
Sbjct: 560 DETSLDTRLWPRAAAFAERVWSDPQLDVT 588


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +2

Query: 611 GGRDQCQGDSGG 646
           GGRD  +GD GG
Sbjct: 97  GGRDGDRGDGGG 108


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 566 G*WVCNVGRRHSD*WSRPGLTELLRIRPSERC 471
           G W+  V +     W  P L+E L +  +E C
Sbjct: 135 GTWIRAVRKCLYKLWKMPSLSEFLSLFGTETC 166


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 566 G*WVCNVGRRHSD*WSRPGLTELLRIRPSERC 471
           G W+  V +     W  P L+E L +  +E C
Sbjct: 135 GTWIRAVRKCLYKLWKMPSLSEFLSLFGTETC 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,343
Number of Sequences: 336
Number of extensions: 4740
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)