Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0875
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 30 1.6
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 30 2.1
03_02_0700 - 10517754-10519100 29 2.8
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 29 2.8
12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800 29 3.6
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 29 3.6
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 29 3.6
06_01_1145 - 9575173-9575553,9575712-9575858,9575971-9576024,957... 29 3.6
10_08_0108 + 14860469-14861032 29 4.8
10_08_0106 + 14842748-14843085,14843122-14843250,14844145-148442... 29 4.8
05_01_0570 + 5061600-5062142,5062790-5062972 28 6.4
09_02_0234 - 6116931-6117052,6117549-6118369,6118573-6118601,611... 28 8.4
02_04_0411 + 22670418-22670499,22670708-22671045 28 8.4
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Frame = +3
Query: 3 YAVYHYFVGPW-AC---CCGGCSYQPTKDYWWLHD---QH*PVSRYSC 125
+ +YH+ GPW C C GG Y+ Y L D +H PV SC
Sbjct: 83 HEIYHWVAGPWMKCSSPCDGGVRYRDVACYGNLSDATIKHYPVDDASC 130
>09_06_0001 +
20114108-20115686,20115813-20115928,20116416-20117394,
20118820-20119082
Length = 978
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -2
Query: 524 WSRPGLTELLRIRPSERCSTP 462
++R GLT LL+ P+ RC+TP
Sbjct: 11 YTRKGLTTLLQTNPNSRCTTP 31
>03_02_0700 - 10517754-10519100
Length = 448
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 423 YNLGDNQVVWAAGWGATSLGGSNSEQLRQSRSGP 524
+N GDNQ++ G+ SLG +++R S P
Sbjct: 393 FNFGDNQILQMYGFTHKSLGSRKVKRIRNETSNP 426
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 61 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 177
TNPQ +IGGS + ++ Y + Y +++ W GGN
Sbjct: 251 TNPQFVIGGSLSPVSIY---GSTQYEYDYLVWKDPAGGN 286
>12_01_0894 - 8661025-8661147,8661701-8661769,8661798-8661800
Length = 64
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -1
Query: 669 RTRLWRRGPPESPWHWSRPPTSKTPEHN 586
R LW PE PW W + + HN
Sbjct: 33 RQGLWAYDNPEKPWEWRKNKRKASEHHN 60
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -1
Query: 687 KEQTPTRTRLWRRGPPESPWHWSR 616
+E LW G PE PW W R
Sbjct: 270 REAKAANRGLWASGNPEKPWDWRR 293
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = -1
Query: 687 KEQTPTRTRLWRRGPPESPWHWSR 616
+E LW G PE PW W R
Sbjct: 332 REARAANRGLWASGNPEKPWDWRR 355
>06_01_1145 -
9575173-9575553,9575712-9575858,9575971-9576024,
9576692-9576862,9577004-9577231,9577392-9577478,
9577600-9577761
Length = 409
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 61 TNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGN 177
TNPQ +IGGS + ++ Y Y +++ W GGN
Sbjct: 254 TNPQFVIGGSISPVSTY---GDTQYEYDYLVWKDPAGGN 289
>10_08_0108 + 14860469-14861032
Length = 187
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 690 PKEQTPTRTRLWRRGPPESPWHWSR 616
P+ P R R WRR +PWH R
Sbjct: 23 PRTTLPLRCRRWRRRRRLAPWHGGR 47
>10_08_0106 + 14842748-14843085,14843122-14843250,14844145-14844211,
14847177-14847324,14847998-14848097,14848306-14848384,
14848527-14848687,14848829-14848908,14849319-14849475,
14849575-14849723,14849909-14850076,14850426-14850719,
14851002-14851046,14851213-14851462,14851707-14851835,
14852799-14853039,14853977-14854642
Length = 1066
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 686 KSRHQRGRGCGGEDHRSHPGTGRDHRR 606
+SR +RG G G H +H G G RR
Sbjct: 1040 RSRERRGGGSDGNHHHNHGGGGGHKRR 1066
>05_01_0570 + 5061600-5062142,5062790-5062972
Length = 241
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 704 QRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQSTT 585
+R+T +SR GRG G R G RRP+ + TT
Sbjct: 142 RRATRARSRLSAGRGDGVGGARGRAVRGSARRRPRKEETT 181
>09_02_0234 -
6116931-6117052,6117549-6118369,6118573-6118601,
6118711-6119020,6119469-6119476,6120104-6120232,
6120341-6120445
Length = 507
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 586 HVSGDSTVNGSVTL-DAGILIDGPDLD*RSCSELDPPSD 473
H GD+ ++ T D +++ D+D SC DPPS+
Sbjct: 323 HCEGDTDIDDLYTPEDVDVVLGVADMDDMSCELSDPPSE 361
>02_04_0411 + 22670418-22670499,22670708-22671045
Length = 139
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = +2
Query: 611 GGRDQCQGDSGGPLLHNRVLVGVCSLGQYCADR 709
GG D GD GGP H R G C G Y DR
Sbjct: 96 GGGDD--GDCGGPCEHRRCEYGCCE-GGYGGDR 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,139,251
Number of Sequences: 37544
Number of extensions: 534594
Number of successful extensions: 1701
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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