Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0875
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    49   4e-08
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.71 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.8  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   6.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 24/64 (37%), Positives = 39/64 (60%)
 Frame = +1

Query: 64  NPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCGGNILNQRSILSAAHCPYGDATGRW 243
           NP RI+GG+ T IN++P +A +  T+   +    CG  I+++R +L+AAHC   + T + 
Sbjct: 157 NPSRIVGGTNTGINEFPMMAGIKRTY---EPGMICGATIISKRYVLTAAHCIIDENTTKL 213

Query: 244 RIRV 255
            I V
Sbjct: 214 AIVV 217



 Score = 41.9 bits (94), Expect = 6e-06
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
 Frame = +3

Query: 261 TFTNSGGVVHNVNRIIIHPNYNRRTAD----SDLCILRSNSNIAYNNNVRPINIAGANY- 425
           T TN+  V+H++N++IIHP Y+    D    +D+ +L++  +I + + V P  +   ++ 
Sbjct: 226 TETNAT-VLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFL 284

Query: 426 NLGDNQVVWAAGWGATSLGGSNSEQLRQS 512
           +      V   GWG TS  G  S  L+++
Sbjct: 285 DSFAGSDVTVLGWGHTSFNGMLSHILQKT 313



 Score = 31.1 bits (67), Expect = 0.011
 Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +2

Query: 509 VQVWTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR------VL 670
           +Q  T+N    V+ Y+     I  N +C+      G+D CQ DSGGP+L         V 
Sbjct: 310 LQKTTLNMLTQVECYKYYGN-IMVNAMCAYAK---GKDACQMDSGGPVLWQNPRTKRLVN 365

Query: 671 VGVCSLGQYC 700
           +G+ S G  C
Sbjct: 366 IGIISWGAEC 375


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = -2

Query: 458  SSPNNLVITKIVIGTSNINRTNVVVISYVGITA*DAEVTVSSTSV--IVGMND--NSVHV 291
            ++  ++V+T +   T+ IN     VIS  G T     +  SSTS+  I    D  N V  
Sbjct: 825  TTEQSVVVTNV---TTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVKT 881

Query: 290  MHNTPTVGKGGTTRIRQRPVA 228
               T T  K   T I  +PVA
Sbjct: 882  QITTNTPAK-KATNIGGKPVA 901


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
 Frame = +3

Query: 381 YNNNVRPINIAGANYNLGDNQVVWAAGWGATSL-----GGSNSEQLRQSRSGPSIRMPAS 545
           Y    R   I   +  LG  QV+ A+G    +L     GG+N++     R+  S      
Sbjct: 226 YYKIYRAAVIQTKSLKLGTKQVLMASGELELTLRIHRGGGTNTDARHLFRTASSTPEDLQ 285

Query: 546 NVTDPLTVLSPLTC 587
           ++ +PLT +    C
Sbjct: 286 DLEEPLTTIQHNNC 299


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 710 DGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDH 612
           D + S +P  R++ G   G     S PGTGR+H
Sbjct: 374 DLRMSPLPSIRNRSGLVSGS----STPGTGREH 402


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +2

Query: 500 TPSVQVWTINQNAC 541
           TP  QV TI QNAC
Sbjct: 472 TPGPQVETILQNAC 485


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -2

Query: 461 TSSPNNLVITKIVIGTSNINRTNVVVISY 375
           +S+  N ++  +++GT  I  + +++ISY
Sbjct: 2   SSTEANELVMSVIVGTVVIVSSLIILISY 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 100  INQYPGIAALLYTWNWNQWWQ 162
            +  Y   AA + TWN  ++W+
Sbjct: 1178 LRPYLRTAAAILTWNEKRFWE 1198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,237
Number of Sequences: 438
Number of extensions: 5301
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)