Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0875
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05030.1 68415.m00525 hypothetical protein                          31   1.00 
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ...    29   4.0  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        28   5.3  
At2g48020.2 68415.m06011 sugar transporter, putative similar to ...    28   5.3  
At2g48020.1 68415.m06010 sugar transporter, putative similar to ...    28   5.3  
At2g40410.2 68415.m04984 Ca(2+)-dependent nuclease, putative sim...    28   5.3  
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ...    28   7.0  
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con...    28   7.0  
At5g67300.1 68418.m08486 myb family transcription factor contain...    27   9.3  
At5g16900.1 68418.m01981 leucine-rich repeat protein kinase, put...    27   9.3  
At3g24506.1 68416.m03075 expressed protein                             27   9.3  
At2g17240.1 68415.m01991 expressed protein                             27   9.3  

>At2g05030.1 68415.m00525 hypothetical protein
          Length = 205

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 707 GQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 591
           G+RS +P+S        G +DHR   G  +DHRR + Q+
Sbjct: 67  GERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104


>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
            profile PF03107: DC1 domain
          Length = 1610

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 677  HQRGRGCGGEDHRSHPGTGRDHRRPKH 597
            H R RGC GE+H+ +     D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 672 TRTRLWRRGPPESP 631
           T T LWR GPPE P
Sbjct: 13  TNTPLWRNGPPEKP 26


>At2g48020.2 68415.m06011 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 58  PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 171
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g48020.1 68415.m06010 sugar transporter, putative similar to
           ERD6 protein {Arabidopsis thaliana} GI:3123712,
           sugar-porter family proteins 1 and 2 [Arabidopsis
           thaliana] GI:14585699, GI:14585701; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 463

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 58  PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 171
           P N + + GG  T +N + G  A+ YT+N+   W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426


>At2g40410.2 68415.m04984 Ca(2+)-dependent nuclease, putative
           similar to Ca(2+)-dependent nuclease [Arabidopsis
           thaliana] GI:7684292
          Length = 332

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 687 KEQTPTRTRLWRRGPPESPWHWSR 616
           KE    R  LW    PE PW W +
Sbjct: 304 KEARQKRIGLWASSNPEKPWDWRK 327


>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
           contains Pfam:PF00320 GATA zinc finger domain
          Length = 470

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 672 TRTRLWRRGPPESP 631
           T T LWR GPPE P
Sbjct: 13  TSTPLWRNGPPEKP 26


>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-glucosidase BGQ60 precursor GB:A57512
           [Hordeum vulgare]; similar to beta-mannosidase enzyme
           (GI:17226270) [Lycopersicon esculentum]
          Length = 512

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 468 HPNQQPKQLGYHQDCN 421
           HP  +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371


>At5g67300.1 68418.m08486 myb family transcription factor contains
           PFAM profile: myb DNA binding domain PF00249
          Length = 305

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 665 RGCGGEDHRSHPGTGRDHRRPK 600
           R CGG DHR + G+  DHR  K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125


>At5g16900.1 68418.m01981 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 866

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +3

Query: 366 NSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGSNSEQLRQSRSGPSIRMPAS 545
           N  I+Y+ ++ P+++A +      N+            GG+ S QL +S + P +R+P  
Sbjct: 301 NGKISYDESITPLDLAVSTVETVVNKCD----------GGNCSLQLVRSEASPGVRVPLV 350

Query: 546 NVTDPLTVL 572
           N  +  T +
Sbjct: 351 NAMEAFTAI 359


>At3g24506.1 68416.m03075 expressed protein
          Length = 149

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 675 PTRTRLWRRGPPESPWHWSRPPTSKTPE 592
           P   +L RR P + P  W RP   + P+
Sbjct: 71  PEEEKLTRRNPLDFPIEWERPKPGRRPD 98


>At2g17240.1 68415.m01991 expressed protein
          Length = 140

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 675 PTRTRLWRRGPPESPWHWSRPPTSKTPE 592
           P   +L RR P + P  W RP   + P+
Sbjct: 63  PEEEKLTRRNPLDFPIEWERPKPGRRPD 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,070
Number of Sequences: 28952
Number of extensions: 389934
Number of successful extensions: 1166
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)