Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0872
(562 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 109 3e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 61 9e-11
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 50 2e-07
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 39 6e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 38 0.001
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 37 0.002
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 33 0.038
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.15
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.47
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.62
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 27 1.4
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 27 1.4
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 2.5
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 26 4.4
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 109 bits (262), Expect = 3e-25
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 432
G+SAAVSKT APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN
Sbjct: 35 GVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGN 94
Query: 433 FANVIRYFPTQALNFAFKDKYKQVF 507
ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 95 TANVLRYFPTQALNFAFKDKFKKMF 119
Score = 30.3 bits (65), Expect = 0.20
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
G + A S V ++ + L S + ++++ G+VD + + + GL +RG
Sbjct: 140 GAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFG 199
Query: 436 ANVIRYFPTQALNFAFKDKYKQV 504
+V+ + L F D K V
Sbjct: 200 PSVVGIVVYRGLYFGMYDTLKPV 222
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 61.3 bits (142), Expect = 9e-11
Identities = 31/82 (37%), Positives = 50/82 (60%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
G++A VS+T V+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN
Sbjct: 28 GVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNG 80
Query: 436 ANVIRYFPTQALNFAFKDKYKQ 501
N +R FP A+ FA + KQ
Sbjct: 81 TNCLRAFPYGAVQFATFNMLKQ 102
Score = 33.1 bits (72), Expect = 0.029
Identities = 17/74 (22%), Positives = 34/74 (45%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
G + + +T P + ++ QV + YK I A I K +G+ F+RG
Sbjct: 234 GFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYS 290
Query: 436 ANVIRYFPTQALNF 477
+N+++ P ++ +
Sbjct: 291 SNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 50.0 bits (114), Expect = 2e-07
Identities = 30/91 (32%), Positives = 50/91 (54%)
Frame = +1
Query: 232 VR*GLPGCGISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 411
V+ G+ G G + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 18 VKSGIAG-GTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 412 LSFWRGNFANVIRYFPTQALNFAFKDKYKQV 504
++G+ A + R FP + F ++ ++V
Sbjct: 76 HGLYQGHTATLYRVFPYAGIKFVAYEQVRRV 106
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +1
Query: 259 ISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 438
+S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSP 400
Query: 439 NVIRYFPTQALNFAFKDKYKQ 501
N+++ P+ A+++ + K+
Sbjct: 401 NLLKVAPSVAISYLVYENCKK 421
Score = 29.5 bits (63), Expect = 0.35
Identities = 19/92 (20%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGN 432
G++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG
Sbjct: 236 GMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGV 291
Query: 433 FANVIRYFPTQALNFAFKDKYKQVFPAALTRR 528
++ FP A + + K+ + L R
Sbjct: 292 LVGILGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 37.9 bits (84), Expect = 0.001
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Frame = +1
Query: 286 VAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYF 456
VA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 17 VAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILMEA 76
Query: 457 PTQALNFAFKDKYKQVFPAALTRRRSSGVTSLV 555
P +AL FA D Y +++ R+ SS S++
Sbjct: 77 PKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 33.1 bits (72), Expect = 0.029
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 286 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 462
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 463 QALNFAFKDKYKQVFPAALTR 525
A F K + A +R
Sbjct: 175 NAGYFGVIQKIRNSLTPASSR 195
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 36.7 bits (81), Expect = 0.002
Identities = 23/83 (27%), Positives = 44/83 (53%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
G+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++G
Sbjct: 212 GLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFKGIR 270
Query: 436 ANVIRYFPTQALNFAFKDKYKQV 504
++ P A+++A + K++
Sbjct: 271 PRMVVAMPATAVSWAAYEAGKEI 293
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 32.7 bits (71), Expect = 0.038
Identities = 21/78 (26%), Positives = 37/78 (47%)
Frame = +1
Query: 244 LPGCGISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 423
L G GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ +
Sbjct: 276 LGGAGIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLY 332
Query: 424 RGNFANVIRYFPTQALNF 477
G A+++R P + F
Sbjct: 333 GGLTAHLLRVVPNACILF 350
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.15
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 292 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 471
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 472 NFAFKDKYKQV 504
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.1 bits (62), Expect = 0.47
Identities = 19/83 (22%), Positives = 36/83 (43%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
GIS+ + + +AP + +K+ +Q+ S + F +++G+ + WRGN
Sbjct: 24 GISSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNV 72
Query: 436 ANVIRYFPTQALNFAFKDKYKQV 504
+ Y A F K K +
Sbjct: 73 VAELLYLVYGAAEFVAFSKLKHL 95
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.62
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 346 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 444
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWR 426
G + S VAP++ VK Q Q + G + + I +G+ +R
Sbjct: 13 GAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYR 72
Query: 427 GNFANVIRYFPTQALNFAFKDKYKQVF 507
G ++ Y P+ ++ F +K K +F
Sbjct: 73 GVGPMMLGYLPSWSIYFVVYEKCKVLF 99
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 27.5 bits (58), Expect = 1.4
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 253 CGISAAVSKTDV-APIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
CG++A V + V P+E +K Q+ +++ + + +GL F+RG
Sbjct: 89 CGMTAEVVSSFVWTPLEVIKARTQISQKGS----------VINTISTLARSEGLKGFYRG 138
Query: 430 NFANVIRYFPT 462
+ V Y PT
Sbjct: 139 YWMGVAIYLPT 149
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 1.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 58 TYPMCSRDYEITPNLLFKNQELVFRDPPSACAATPTSTY 174
TY M + YE+ N F N PP AC+ TS Y
Sbjct: 356 TYSMLA--YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 386 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATSV 279
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 4.4
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 259 ISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 429
IS + V P+E V++ LQ+Q K + Y G D +I + GL +G
Sbjct: 121 ISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,961
Number of Sequences: 5004
Number of extensions: 40812
Number of successful extensions: 126
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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