Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0872
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   156   1e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   156   1e-40
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (379), Expect = 1e-40
 Identities = 70/84 (83%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 436 ANVIRYFPTQALNFAFKDKYKQVF 507
           ANVIRYFPTQALNFAFKDKYKQVF
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVF 101



 Score = 33.5 bits (73), Expect = 0.001
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 MSNLADPVAFAKDFLA 253
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 27.5 bits (58), Expect = 0.098
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 292 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 450
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.8 bits (54), Expect = 0.30
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +1

Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFP 510
            +V      +A  F F D  + + P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP 205



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 519 DKKTQFWRDFAGNL 560
           DK TQF R F GNL
Sbjct: 106 DKNTQFLRYFVGNL 119


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (379), Expect = 1e-40
 Identities = 70/84 (83%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 436 ANVIRYFPTQALNFAFKDKYKQVF 507
           ANVIRYFPTQALNFAFKDKYKQVF
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVF 101



 Score = 33.5 bits (73), Expect = 0.001
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 MSNLADPVAFAKDFLA 253
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 27.5 bits (58), Expect = 0.098
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 292 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 450
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.8 bits (54), Expect = 0.30
 Identities = 20/85 (23%), Positives = 36/85 (42%)
 Frame = +1

Query: 256 GISAAVSKTDVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 435
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G+   +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFP 510
            +V      +A  F F D  + + P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP 205



 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 519 DKKTQFWRDFAGNL 560
           DK TQF R F GNL
Sbjct: 106 DKNTQFLRYFVGNL 119


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 406 PAPWGCARRRRR 371
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 131 VIPHPRVPQLPPRHIHLVKIT 193
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,470
Number of Sequences: 438
Number of extensions: 2988
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)