Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0870
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.9  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          23   2.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   2.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           23   2.5  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   4.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 512 LTLIITQSWDPRWRQS 559
           +TLI+ + + PRWRQ+
Sbjct: 644 MTLILDKFFFPRWRQT 659


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 377 AELQSDISPTSVASEAAKFRRKNMTRAASESKL 475
           AE  S +SP SVAS A+    + + R  S + +
Sbjct: 159 AETASSLSPQSVASTASSADHQIVDRLLSHAPI 191


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 581 SPGPELPLTDATGDPNSELLSMSTVSVCLFWPVLASTSTRMRLVSCFF 438
           +PG +L +     DPN+  L ++T +      VL S S  +RL +  F
Sbjct: 133 TPGIKLSINIILSDPNTNKLKLNT-NESYELTVLKSDSLAVRLSAANF 179


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 377 AELQSDISPTSVASEAAKFRRKNMTRAASESKL 475
           AE  S +SP SVAS A+    + + R  S + +
Sbjct: 150 AETASSLSPQSVASTASSADHQIVDRLLSHAPI 182


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 506 IPLTLIITQSWDPRWRQSAGVPAR 577
           IP  LI+  SW   W      PAR
Sbjct: 76  IPSGLIVIISWVSFWLNRNATPAR 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,906
Number of Sequences: 336
Number of extensions: 1918
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)