Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0870
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.0  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   3.5  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    26   3.5  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    26   4.6  
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...    26   4.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   6.1  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   8.1  

>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +2

Query: 344 NKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMTRAASESKLMPKPAKIGRRIPLTLI 523
           NK  Y    +D+E+Q+D    +V +         + R++S+S + P   +     P    
Sbjct: 430 NKASYSSY-EDSEIQNDDETRTVGTPTETISVVRLRRSSSQSNIEPNGVRSPTSSPTGSP 488

Query: 524 ITQSWDPRW 550
           I ++   RW
Sbjct: 489 IRRTSGNRW 497


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = +3

Query: 9   ESSFVSNKSKASEDLDKAGQGRRTRKSVVATKPELSVIPEAAVEESKEGSAIIDELSKSR 188
           ++ F + KS  S+D D + +    R   ++T  E S  P     ++      +DE  + R
Sbjct: 20  DNPFATAKSYYSKDTDLSTRVSAGRPRTLSTSMEASAAPTIPELKNLRRRGSLDEHKQPR 79

Query: 189 RMTRGQQTALSTLLE 233
           +        L+ LLE
Sbjct: 80  KFLVDVDKTLNALLE 94


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +3

Query: 102 KPELSVIPEAAVEESKE------GSAIIDELSKSRRMTRGQQTALSTLLEK 236
           KP+L  I E+ VEE  E       S I+ E+S S   +    T+  T+L +
Sbjct: 233 KPQLQHIYESVVEEKSEAFASATSSKILSEMSASMASSSAHYTSSPTILSR 283


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 566 LPLTDATGDPNSELLSMSTVSVCLFWPVLASTSTRMRLVSCF 441
           +P + +   PN +L SM  ++  +F   LAS  +   L  CF
Sbjct: 276 VPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCF 317


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 18/53 (33%), Positives = 22/53 (41%)
 Frame = +2

Query: 320 PMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMTRAASESKLM 478
           P+D   LLN      IP   E  S  SP       AKF + + T+    SK M
Sbjct: 434 PVDVNELLNVEFISQIPMSTETSSSSSPQPTEERKAKF-KPSFTQGTFVSKRM 485


>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 519 NVNGIRLPILAGFGINFDSDAARVMFFLRNLA 424
           NV G+R  + AG  INF  D A     LRN++
Sbjct: 81  NVEGLRDALFAGEHINFTEDRAVFHPALRNVS 112


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 551  ATGDPNSELLSMSTVSVCLFWPVLASTSTRMRLVSCFF 438
            ATGD +  +L+M      +FW ++   +T  R+ S F+
Sbjct: 1284 ATGDLDPVILNMCQSHHVIFWDLIDVATTFARVDSSFY 1321


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 489 AGFGINFDSDAARVMFFLRNLAASDATEV 403
           A +GI FD      M  LRN+   DAT V
Sbjct: 71  ANYGIYFDDTEYDYMQHLRNIGNEDATWV 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,905,838
Number of Sequences: 5004
Number of extensions: 30014
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)