Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0870
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0054 + 22400278-22400420,22400545-22401037                       30   1.2  
09_02_0092 + 4173741-4175417                                           29   2.7  
09_04_0271 + 16271569-16271767,16272072-16272206,16272286-162725...    29   3.6  
08_02_1047 - 23927822-23928112,23928736-23928981,23929119-239293...    28   6.2  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    28   6.2  
04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422     27   8.2  
04_03_0368 + 15004949-15005659,15005789-15005848                       27   8.2  

>04_04_0054 + 22400278-22400420,22400545-22401037
          Length = 211

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 368 PDDAELQSDISPTSVASEAAKFRRKNMTRAASESKLMPKPAKIGRRI 508
           P  +    + SPT+++SEA + RR       S S+  P  A +GR +
Sbjct: 105 PSSSMTDQETSPTTMSSEAERQRRLQEAAGWSASRRAPDTAGLGRPV 151


>09_02_0092 + 4173741-4175417
          Length = 558

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -1

Query: 255 WFWGRAASPVA 223
           WFWGR ASPVA
Sbjct: 395 WFWGRTASPVA 405


>09_04_0271 +
           16271569-16271767,16272072-16272206,16272286-16272548,
           16272865-16272996,16273083-16273199,16273752-16273904,
           16274417-16274529,16274600-16274753,16274900-16275118
          Length = 494

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -1

Query: 477 INFDSDAAR-VMFFLRNLAA-SDATEVGDISDCNSASSGIPS 358
           ++  SD AR V   L N     +  ++GD+   NS SSG+PS
Sbjct: 260 VHLSSDLARQVATILENAQTFQENRKIGDVPSVNSNSSGVPS 301


>08_02_1047 -
          23927822-23928112,23928736-23928981,23929119-23929395,
          23929522-23929799,23931147-23931572
          Length = 505

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 69 PAQPCPGPRWPCSCWTQRSFPRR 1
          P  PCP P  P S W  R+ PRR
Sbjct: 2  PLAPCPSPPLPSSPWPARA-PRR 23


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 365 IPDDAELQSDISPTSVASEAAKFRRKNMTRAASES 469
           IP    L +D++   VAS+  K R+K +  +AS S
Sbjct: 158 IPHSEHLNNDLTQDPVASKKPKVRKKEIHNSASSS 192


>04_04_0797 - 28137656-28137836,28138082-28138207,28138364-28138422
          Length = 121

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = +1

Query: 334 LAPKQNRLRRDPGRCR-VAIRY-ISYLCSVGGS*ISQKKHDTSRIRVEVDAKTGQN 495
           L P+ N++ R   +CR V  ++ ISYL    GS I+ +K+D +  + ++D +  Q+
Sbjct: 62  LFPRLNKVNRPKQQCRFVNCKWRISYLQLGVGSIINLEKYDDAYGKFKIDTRCRQS 117


>04_03_0368 + 15004949-15005659,15005789-15005848
          Length = 256

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 572 PELPLTDATGDPNSELLSMSTVS 504
           P LP  DAT DP ++  + ST S
Sbjct: 193 PRLPAADATADPATDTFATSTTS 215


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,799,138
Number of Sequences: 37544
Number of extensions: 245974
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)