Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0870
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50581| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)                     30   1.6  
SB_33215| Best HMM Match : HECT (HMM E-Value=0)                        30   1.6  
SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)                  29   2.8  

>SB_50581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 105 PELSVIPEAAVEESKEGSAIIDELSKSRRMTRGQQTALSTL 227
           P++ VI  A  + S+E   + + L +S R+ RG+ TALS L
Sbjct: 21  PQMHVINHAKGQPSEETRQVRNVLHESARIARGKITALSEL 61


>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
          Length = 284

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 105 PELSVIPEAAVEESKEGSAIIDELSKSRRMTRGQQTALSTL 227
           P++ VI  A  + S+E   + + L +S R+ RG+ TALS L
Sbjct: 154 PQMHVINHAKGQPSEETRQVRNVLHESARIARGKITALSEL 194


>SB_33215| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1128

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/51 (31%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +3

Query: 33  SKASEDLDKAGQGRRTRKSV-VATKPELSVIPEAAVEESKEGSAIIDELSK 182
           + +SE LD+ G+G  +R ++ V TK   +V+ + +V  S+ G + +D  S+
Sbjct: 239 ASSSEGLDREGEGTASRVAIMVGTKFLRAVVRQMSVHLSRSGVSYVDLRSR 289


>SB_45285| Best HMM Match : AT_hook (HMM E-Value=0.13)
          Length = 440

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +3

Query: 24  SNKSKASEDLDKAGQGRRTRKSVVATKPELSVIPEAAVEESKEGSAIID 170
           SNK    E L      R+ +    AT+ EL+VIPE   +ES + S I D
Sbjct: 237 SNKQDFKETLPDLAISRKEKHEKKATQMELNVIPEDK-QESDDDSDISD 284



 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 27  NKSKASEDLDKAGQGRRTRKSVVATKPELSVIPEAAVEESKEGSAIIDE 173
           NKS +S      G  R  +   +A KP  S  P   V ++K+ SA++ E
Sbjct: 161 NKSSSSLTKQSPGLVRSLKGKRLAHKPSASASPGTKVLQTKKKSALVTE 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,219,433
Number of Sequences: 59808
Number of extensions: 265481
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)