Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= mg--0870
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81075-7|CAI79229.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z81075-3|CAI79228.1| 192|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z81075-2|CAB03048.1| 368|Caenorhabditis elegans Hypothetical pr... 30 1.0
AL032645-3|CAI79264.1| 342|Caenorhabditis elegans Hypothetical ... 30 1.0
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 28 4.2
Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical p... 28 4.2
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 28 4.2
U80452-3|AAB37861.1| 339|Caenorhabditis elegans Hypothetical pr... 27 7.4
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 9.7
>Z81075-7|CAI79229.1| 342|Caenorhabditis elegans Hypothetical
protein F35C12.3c protein.
Length = 342
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMT----------RA 457
++ +P R++ LNK + + D AEL D P +S AA+ + + T +
Sbjct: 262 WNAEPEHRVTNLNKDEVQSRFDSAELDED-HPHGSSSRAARSGKPDTTDPTTVAMEESKN 320
Query: 458 ASESKLMPKPAKIGRRIPLTLI 523
+E+ M +PA+ G I + LI
Sbjct: 321 ITETSEMSEPAETGEEIDIPLI 342
>Z81075-3|CAI79228.1| 192|Caenorhabditis elegans Hypothetical
protein F35C12.3b protein.
Length = 192
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMT----------RA 457
++ +P R++ LNK + + D AEL D P +S AA+ + + T +
Sbjct: 112 WNAEPEHRVTNLNKDEVQSRFDSAELDED-HPHGSSSRAARSGKPDTTDPTTVAMEESKN 170
Query: 458 ASESKLMPKPAKIGRRIPLTLI 523
+E+ M +PA+ G I + LI
Sbjct: 171 ITETSEMSEPAETGEEIDIPLI 192
>Z81075-2|CAB03048.1| 368|Caenorhabditis elegans Hypothetical
protein F35C12.3a protein.
Length = 368
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMT----------RA 457
++ +P R++ LNK + + D AEL D P +S AA+ + + T +
Sbjct: 288 WNAEPEHRVTNLNKDEVQSRFDSAELDED-HPHGSSSRAARSGKPDTTDPTTVAMEESKN 346
Query: 458 ASESKLMPKPAKIGRRIPLTLI 523
+E+ M +PA+ G I + LI
Sbjct: 347 ITETSEMSEPAETGEEIDIPLI 368
>AL032645-3|CAI79264.1| 342|Caenorhabditis elegans Hypothetical
protein F35C12.3c protein.
Length = 342
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMT----------RA 457
++ +P R++ LNK + + D AEL D P +S AA+ + + T +
Sbjct: 262 WNAEPEHRVTNLNKDEVQSRFDSAELDED-HPHGSSSRAARSGKPDTTDPTTVAMEESKN 320
Query: 458 ASESKLMPKPAKIGRRIPLTLI 523
+E+ M +PA+ G I + LI
Sbjct: 321 ITETSEMSEPAETGEEIDIPLI 342
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMTR 454
+++Q +D + Y GIP D +++ ++ TS+ A K R+ ++ R
Sbjct: 168 YNLQTLDLKIRSDNAKYAGIPSDVKIRRNVM-TSINENATKLRKLHIDR 215
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMTR 454
+++Q +D + Y GIP D +++ ++ TS+ A K R+ ++ R
Sbjct: 168 YNLQTLDLKIRSDNAKYAGIPSDVKIRRNVM-TSINENATKLRKLHIDR 215
>Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical
protein B0564.6b protein.
Length = 423
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMTR 454
+++Q +D + Y GIP D +++ ++ TS+ A K R+ ++ R
Sbjct: 66 YNLQTLDLKIRSDNAKYAGIPSDVKIRRNVM-TSINENATKLRKLHIDR 113
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 308 FDVQPMDRISLLNKTDYEGIPDDAELQSDISPTSVASEAAKFRRKNMTR 454
+++Q +D + Y GIP D +++ ++ TS+ A K R+ ++ R
Sbjct: 168 YNLQTLDLKIRSDNAKYAGIPSDVKIRRNVM-TSINENATKLRKLHIDR 215
>U80452-3|AAB37861.1| 339|Caenorhabditis elegans Hypothetical
protein C16C8.17 protein.
Length = 339
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 42 SEDLDKAGQGRRTRKSVVATKPELSVIPEAAVE 140
SE+ D+AG R + V +PE+ +PEA E
Sbjct: 185 SEESDRAGVSRELEEVRVLEEPEVPDVPEALEE 217
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/73 (21%), Positives = 30/73 (41%)
Frame = +3
Query: 6 SESSFVSNKSKASEDLDKAGQGRRTRKSVVATKPELSVIPEAAVEESKEGSAIIDELSKS 185
+E S + K +++ + T+K+ +P + P E S G A ELS +
Sbjct: 607 AEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTTTTESSTTGKATTPELSTT 666
Query: 186 RRMTRGQQTALST 224
T + ++T
Sbjct: 667 SEETTTTELKITT 679
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,374
Number of Sequences: 27780
Number of extensions: 189587
Number of successful extensions: 610
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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