Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0870
         (582 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11760.1 68418.m01373 expressed protein                             28   4.0  
At1g74720.1 68414.m08658 C2 domain-containing protein contains I...    27   6.9  
At3g48120.1 68416.m05248 expressed protein                             27   9.1  

>At5g11760.1 68418.m01373 expressed protein
          Length = 181

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 21  VSNKSKASEDLDKAGQGRRTRKSVVATKPELSVIPEAAVEESKEGSAIIDELS 179
           V    K  +++D    GR  R   V   PE    PEA V ES++  A ++EL+
Sbjct: 30  VPKPGKIGKEIDDIFAGRSQRTPEVQN-PESRDTPEAQVSESRDTRAEMNELN 81


>At1g74720.1 68414.m08658 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1081

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 488 AKIGRRIPLTLIITQSWDPRWRQ 556
           AK G++   T  IT S+DPRW +
Sbjct: 700 AKYGKKWVRTRTITDSFDPRWHE 722


>At3g48120.1 68416.m05248 expressed protein
          Length = 328

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
 Frame = +3

Query: 3   ASESSFVSNKSKAS---EDLDKAGQGRRTRKSVVATKPELSVIPEAAVEESKE----GSA 161
           AS SSF++   KAS   +  D      R+ +  +  KPE   +PE +  ES E     S 
Sbjct: 44  ASSSSFLNQFVKASNHTKSTDNKDSEIRSIRDKLKKKPEDPRVPERSYRESSERRRYRSR 103

Query: 162 IIDELSKS-RRMTRGQQ 209
             DE  KS RR +R  +
Sbjct: 104 ERDERDKSHRRRSRSSE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,449,348
Number of Sequences: 28952
Number of extensions: 174560
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)