Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0869
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   1.5  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   2.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.7  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   3.5  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   6.2  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.2  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 451 VLPIFLINNSRIYYEASLSFFRTVNYCGNI 540
           V+  F +NN RI  ++ + F RT+ Y  N+
Sbjct: 48  VVDDFFLNNKRIVLDSEIEFNRTIVYVENL 77


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 342 EEHFFLPYKFGDAKM 386
           ++HFF+PY FG A++
Sbjct: 212 DDHFFIPYIFGSAQL 226


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 254 DADSPDASTGRRRESHVENPPVNCSSTAHNK 162
           +A +P +   RRR +H+ NPP    + A N+
Sbjct: 139 NAHAPHSQNRRRRSNHLNNPPEAPITEASNE 169


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = -1

Query: 482 RELLIKKMGRTNFLCKQKNKN-FVYLHVNVQN 390
           R +L+  +GR  F+CK K++  F+ + VN+++
Sbjct: 454 RVMLLTDVGRCAFVCKGKHERLFIEMEVNLKD 485


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 448 FVLPIFLINNSRIYYEASLSFFRTVNYCGNIIN 546
           FV  +   N  +++Y   +SF RTV Y G  I+
Sbjct: 87  FVECLGFFNLFKVFYPLIISFLRTVPYIGPYID 119


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 196 GFST*DSRRLPVDASGLSASRIDTVHKG 279
           G  T D R+  +DA GL+ S I++ H G
Sbjct: 434 GEVTDDQRKTVIDAIGLNDSIIESAHVG 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,682
Number of Sequences: 5004
Number of extensions: 41418
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)