Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0869
         (587 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         31   0.53 
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   2.8  
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)                      28   6.5  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)                27   8.6  

>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 268 LCRSSTRTALTRLPAGAVNLTLRTRQLIV-AARLTTKLRKSLS 143
           L R   R  L + P G +NL +RTRQLI  +  L T  R+++S
Sbjct: 15  LVRDCVREELRKNPGGNINLLMRTRQLIANSPLLGTASREAVS 57


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +3

Query: 342 EEHFFLPYKFGDAKMHILDVYMQIHE 419
           ++ F    ++ +A  H++D+Y+++HE
Sbjct: 464 DDQFLKSPEYSEASSHVMDIYLEVHE 489


>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
          Length = 382

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 383 NAYSGR-LHANTRSFCFFVCTKNSFSP 460
           N  SGR   +++RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -3

Query: 462  NGENEFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKNALRGAFTN*RFTKVKPTPPPVR 283
            NGE+E F+Q   +  R+   +  + +   P        A+RG       TK+  TPP   
Sbjct: 1211 NGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPTTE 1267

Query: 282  RT 277
            RT
Sbjct: 1268 RT 1269


>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
          Length = 1123

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +1

Query: 346  SIFFYRTNLGTLKCIFWTFT--CKYTKF 423
            S  FY   L    C FWT T  CKY K+
Sbjct: 1065 SELFYMCPLCDRNCSFWTLTRSCKYAKY 1092


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,007
Number of Sequences: 59808
Number of extensions: 312282
Number of successful extensions: 768
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)