Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0869
         (587 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC092474-1|AAH92474.1|  304|Homo sapiens PRR16 protein protein.        31   4.0  
BC038838-1|AAH38838.1|  234|Homo sapiens PRR16 protein protein.        31   4.0  
AF242769-1|AAF65446.1|  281|Homo sapiens mesenchymal stem cell p...    31   4.0  
X84753-1|CAA59234.1|  701|Homo sapiens luteinising hormone-chori...    29   9.2  
S57793-1|AAB19917.2|  699|Homo sapiens luteinizing hormone recep...    29   9.2  
M73746-1|AAA70231.1|  685|Homo sapiens lutropin/choriogonadotrop...    29   9.2  
M63108-1|AAA59515.1|  699|Homo sapiens luteinizing hormone-chori...    29   9.2  
AC073082-1|AAY15065.1|  472|Homo sapiens unknown protein.              29   9.2  

>BC092474-1|AAH92474.1|  304|Homo sapiens PRR16 protein protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 312 KVKPTPPPVRRTLVNCVDPRRGQP 241
           K  P PPP R T V C DP+R  P
Sbjct: 119 KPNPPPPPPRLTPVKCEDPKRVVP 142


>BC038838-1|AAH38838.1|  234|Homo sapiens PRR16 protein protein.
          Length = 234

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 312 KVKPTPPPVRRTLVNCVDPRRGQP 241
           K  P PPP R T V C DP+R  P
Sbjct: 49  KPNPPPPPPRLTPVKCEDPKRVVP 72


>AF242769-1|AAF65446.1|  281|Homo sapiens mesenchymal stem cell
           protein DSC54 protein.
          Length = 281

 Score = 30.7 bits (66), Expect = 4.0
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 312 KVKPTPPPVRRTLVNCVDPRRGQP 241
           K  P PPP R T V C DP+R  P
Sbjct: 96  KPNPPPPPPRLTPVKCEDPKRVVP 119


>X84753-1|CAA59234.1|  701|Homo sapiens luteinising
           hormone-choriogonadotropin receptor protein.
          Length = 701

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 388 IFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEASLSFFRTVNYCGN 537
           IF  FTC      FF +   F +P+  + NS++     L  F  +N C N
Sbjct: 577 IFTDFTCM-APISFFAISAAFKVPLITVTNSKVL----LVLFYPINSCAN 621


>S57793-1|AAB19917.2|  699|Homo sapiens luteinizing hormone receptor
           protein.
          Length = 699

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 388 IFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEASLSFFRTVNYCGN 537
           IF  FTC      FF +   F +P+  + NS++     L  F  +N C N
Sbjct: 575 IFTDFTCM-APISFFAISAAFKVPLITVTNSKVL----LVLFYPINSCAN 619


>M73746-1|AAA70231.1|  685|Homo sapiens lutropin/choriogonadotropin
           receptor protein.
          Length = 685

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 388 IFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEASLSFFRTVNYCGN 537
           IF  FTC      FF +   F +P+  + NS++     L  F  +N C N
Sbjct: 560 IFTDFTCM-APISFFAISAAFKVPLITVTNSKVL----LVLFYPINSCAN 604


>M63108-1|AAA59515.1|  699|Homo sapiens luteinizing
           hormone-choriogonadrotropin receptor protein.
          Length = 699

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 388 IFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEASLSFFRTVNYCGN 537
           IF  FTC      FF +   F +P+  + NS++     L  F  +N C N
Sbjct: 575 IFTDFTCM-APISFFAISAAFKVPLITVTNSKVL----LVLFYPINSCAN 619


>AC073082-1|AAY15065.1|  472|Homo sapiens unknown protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 9.2
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 388 IFWTFTCKYTKFLFFCLHKKFVLPIFLINNSRIYYEASLSFFRTVNYCGN 537
           IF  FTC      FF +   F +P+  + NS++     L  F  +N C N
Sbjct: 348 IFTDFTCM-APISFFAISAAFKVPLITVTNSKVL----LVLFYPINSCAN 392


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,046,707
Number of Sequences: 237096
Number of extensions: 1404639
Number of successful extensions: 2536
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2536
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)