Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0869
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    29   3.2  
AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    29   3.2  
Z81557-14|CAN99712.1|  321|Caenorhabditis elegans Hypothetical p...    27   7.5  
Z81557-13|CAB04530.2|  303|Caenorhabditis elegans Hypothetical p...    27   7.5  

>Z83108-2|CAB05510.1|  820|Caenorhabditis elegans Hypothetical
           protein F44E5.2 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 376 TLKCIFWTFTCKYTKFLFFCLHK--KFVLPIFLINNSRIYYEASLSFFRTVNYCGN 537
           TLKC+    T K+  F+  CLH    F+   + I+N  I Y      +R +N C +
Sbjct: 305 TLKCLEHYTTLKHDVFMSQCLHALFNFIKSSYHIDNEWIQY-----VYRAINTCSS 355


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
            (b) subunit protein2 protein.
          Length = 1193

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 274  CELCRSSTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKS 149
            C+ CR+ T+ +  R+P     L      + +A RL  K R+S
Sbjct: 1143 CKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRLMVKPRQS 1184


>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 442 KKFVLPIFLINNSRIYYE--ASLSFFRTVNYCGNIINEFQNKNLD 570
           K+ V    +  N R Y E   S+ +   ++  GN+  +FQN N+D
Sbjct: 7   KELVREFHIFKNHRPYLELTGSIGYIEGLSRPGNVFYQFQNGNID 51


>Z81557-14|CAN99712.1|  321|Caenorhabditis elegans Hypothetical
           protein F59A1.11b protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +1

Query: 436 LHKKFVLPIFLINNSRIY--YEASLSFFRTVNYCGN----IINEFQNKNLDYL 576
           LH      +F++NN R+   Y+  +     +N   +    I+NE Q  NLDY+
Sbjct: 46  LHVAICSRLFIVNNFRVISDYQRLIIVQSVINIIASVFELIVNEIQTVNLDYV 98


>Z81557-13|CAB04530.2|  303|Caenorhabditis elegans Hypothetical
           protein F59A1.11a protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
 Frame = +1

Query: 436 LHKKFVLPIFLINNSRIY--YEASLSFFRTVNYCGN----IINEFQNKNLDYL 576
           LH      +F++NN R+   Y+  +     +N   +    I+NE Q  NLDY+
Sbjct: 46  LHVAICSRLFIVNNFRVISDYQRLIIVQSVINIIASVFELIVNEIQTVNLDYV 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,123,869
Number of Sequences: 27780
Number of extensions: 243737
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)