Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0868
         (682 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8LX70 Cluster: Cytochrome c oxidase subunit I; n=4; Ch...    49   9e-05
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En...    49   9e-05
UniRef50_Q8LX74 Cluster: Cytochrome c oxidase subunit I; n=1; Ch...    49   1e-04
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br...    42   0.018
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol...    35   2.1  
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498...    35   2.1  
UniRef50_Q4RGT0 Cluster: Chromosome 4 SCAF15093, whole genome sh...    34   3.7  
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B...    34   3.7  
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ...    34   3.7  
UniRef50_A7TH97 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ...    33   6.4  
UniRef50_Q4X9I6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q97Z76 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ...    33   6.4  
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F...    33   8.5  

>UniRef50_Q8LX70 Cluster: Cytochrome c oxidase subunit I; n=4;
           Chaoborus|Rep: Cytochrome c oxidase subunit I -
           Chaoborus crystallinus (Phantom midge) (Tipula
           crystallina)
          Length = 207

 Score = 49.2 bits (112), Expect = 9e-05
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIKIF  LAT+HGTQINY+P++L  LG
Sbjct: 18  VPTGIKIFSWLATLHGTQINYSPSLLWALG 47


>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
           Endopterygota|Rep: Cytochrome c oxidase subunit I -
           Copitarsia incommoda
          Length = 150

 Score = 49.2 bits (112), Expect = 9e-05
 Identities = 23/30 (76%), Positives = 25/30 (83%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIKIF  LAT HGTQINY+P+IL  LG
Sbjct: 107 VPTGIKIFSWLATFHGTQINYSPSILWSLG 136


>UniRef50_Q8LX74 Cluster: Cytochrome c oxidase subunit I; n=1;
           Chaoborus punctipennis|Rep: Cytochrome c oxidase subunit
           I - Chaoborus punctipennis
          Length = 205

 Score = 48.8 bits (111), Expect = 1e-04
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIKIF  LAT+HGTQINY P++L  LG
Sbjct: 17  VPTGIKIFSWLATLHGTQINYTPSLLWALG 46


>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
           Bruchidius|Rep: Cytochrome c oxidase subunit I -
           Bruchidius aff. varius GLK-2003
          Length = 339

 Score = 41.5 bits (93), Expect = 0.018
 Identities = 20/30 (66%), Positives = 22/30 (73%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIK+F  LAT HGTQI Y+P  L  LG
Sbjct: 227 VPTGIKVFSWLATFHGTQILYSPVTLWTLG 256


>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
           polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
           Cytochrome oxidase subunits 1 and 2 polyprotein -
           Phaeosphaeria nodorum SN15
          Length = 789

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 16/30 (53%), Positives = 22/30 (73%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIKIF  LAT +G  +++ P++L  LG
Sbjct: 314 VPTGIKIFSWLATCYGGSLHFIPSLLFALG 343


>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
           root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
           (Human)
          Length = 513

 Score = 34.7 bits (76), Expect = 2.1
 Identities = 13/30 (43%), Positives = 22/30 (73%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           +PTG+K+F  LAT+HG+ + ++  +L  LG
Sbjct: 314 IPTGVKVFSWLATLHGSNMKWSAAVLWALG 343


>UniRef50_Q4RGT0 Cluster: Chromosome 4 SCAF15093, whole genome shotgun
            sequence; n=2; Tetraodontidae|Rep: Chromosome 4
            SCAF15093, whole genome shotgun sequence - Tetraodon
            nigroviridis (Green puffer)
          Length = 1833

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 21/49 (42%), Positives = 24/49 (48%)
 Frame = -3

Query: 284  RRRLRCGGPLELCRSSDADSPDASTGRRRESHVENPPVNCSSTAHNKAS 138
            RRR   G PL LCR  + DS DA   + +E H   P  N  S  H K S
Sbjct: 1230 RRRKEQGAPLSLCRRQE-DS-DAGPEQSKEQHKPGPIGNERSLKHRKGS 1276


>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
           Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
           cynthia ricini (Indian eri silkmoth)
          Length = 510

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +3

Query: 588 LYQQELKFLDD*LQYMELKLIITLIFYED 674
           L Q  LKFL D   +MELKLI+ L FYED
Sbjct: 310 LSQLGLKFLVDWQPFMELKLIMVLQFYED 338


>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
           Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
           buchholtzi (Butterflyfish)
          Length = 184

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           +PTG+K+F  LAT+HG  I ++  +L  LG
Sbjct: 79  IPTGVKVFSWLATLHGGSIKWDTPMLWALG 108


>UniRef50_A7TH97 Cluster: Putative uncharacterized protein; n=1;
            Vanderwaltozyma polyspora DSM 70294|Rep: Putative
            uncharacterized protein - Vanderwaltozyma polyspora DSM
            70294
          Length = 2629

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 470  KYANY*LKKMGRTNFLCKQKNKNFVYLHVNVQNMHFSVPKFVR*KKMLFAARSQTE 303
            KYA + +   G  N  C +KN    +L      +HFS+P +   K +L  +R  +E
Sbjct: 1449 KYAGFVVGFKGDINLTCNEKNDPSKFLSCTADKVHFSIPNYFA-KPLLVWSRPTSE 1503


>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
           Eukaryota|Rep: Cytochrome c oxidase subunit I -
           Ophisurus macrorhynchos
          Length = 546

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           +PTG+K+F  LAT+HG  I +   +L  LG
Sbjct: 314 IPTGVKVFSWLATLHGGAIKWETPMLWALG 343


>UniRef50_Q4X9I6 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 206

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = -3

Query: 512 SIYSPKKKTRKLRNKYANY*LKKMGRTNFLCKQKNKNFVYLHVNVQNMHFSVPKFVR*KK 333
           +I+S K K  K  NK  N        +NFLC  KN+  +  H NV+N +  +  + +  K
Sbjct: 127 NIFSIKYKDNKSMNKKVN----TNDNSNFLCSSKNEKCLTDHNNVENDYCRILNYFKINK 182

Query: 332 MLFAAR 315
            ++  R
Sbjct: 183 EIYIDR 188


>UniRef50_Q97Z76 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus solfataricus|Rep: Putative uncharacterized
           protein - Sulfolobus solfataricus
          Length = 637

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 371 YSGRLHANTRSFCFFVCTKNSFSPFFLINNSRIYYEASLSF 493
           + G +  N  S+ ++  T N  + + ++NNS  YYE SLSF
Sbjct: 193 FGGNISQN-ESYYYYTATLN-LNKYMVVNNSHYYYEGSLSF 231


>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
           root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 516

 Score = 33.1 bits (72), Expect = 6.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           +PTG+K+F  LAT+HG  I +   +L  LG
Sbjct: 314 IPTGVKVFSWLATLHGGAIKWETPMLWALG 343


>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
           Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
           - Trichoderma reesei (Hypocrea jecorina)
          Length = 635

 Score = 32.7 bits (71), Expect = 8.5
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIKIF  LAT +G  I   P +L  LG
Sbjct: 373 VPTGIKIFSWLATCYGGSIKMTPVMLFSLG 402


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 559,381,363
Number of Sequences: 1657284
Number of extensions: 10165917
Number of successful extensions: 26763
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26744
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52892566912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)