Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0868
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    27   1.9  
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   3.3  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   3.3  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   5.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYN 655
           +PTGIKIF  LAT+ G  I ++
Sbjct: 320 IPTGIKIFSWLATLTGGAIQWS 341


>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 324 EEHFFLPYKFGDAKM 368
           ++HFF+PY FG A++
Sbjct: 212 DDHFFIPYIFGSAQL 226


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 236 DADSPDASTGRRRESHVENPPVNCSSTAHNK 144
           +A +P +   RRR +H+ NPP    + A N+
Sbjct: 139 NAHAPHSQNRRRRSNHLNNPPEAPITEASNE 169


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 247 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSL-SLEVILPILKA 95
           VDP+T  ALT  P   V  +  + Q    +   +K +K L ++E   P+L+A
Sbjct: 529 VDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRA 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,934
Number of Sequences: 5004
Number of extensions: 44245
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)