Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0868
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 30   2.0  
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                   30   2.0  
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)         30   2.0  
SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)              29   3.5  
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)                      28   8.0  

>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = -1

Query: 259 PWNCVDPRTRTALTRLPAGAVNLTLRTRQLIVA-ARLTTKLRKSLSLEVILPILKALALS 83
           P  CV P +R  L  +P   V+++  +RQL+V+ +    +L  S+   +     +AL L 
Sbjct: 82  PLVCVSPGSRQFLVSIPPTLVSVSSMSRQLLVSFSPAFHQLLASVLSTMRALFARALQLV 141

Query: 82  VDLGSATSLVDTATIAVNTN 23
           +D+ +     D +  +V +N
Sbjct: 142 IDMATNPYKDDKSASSVESN 161


>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 590 VPTGIKIFR*LATIHGTQINYNPNIL*RLG 679
           VPTGIK+F  LAT++G  I  +  +L  +G
Sbjct: 18  VPTGIKVFSWLATLYGGAIRLDTPMLWAIG 47


>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
          Length = 1693

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 253 NCVDPRTRTALTRLPAGAVNLTLRTRQLIV-AARLTTKLRKSLS 125
           N V    R  L + P G +NL +RTRQLI  +  L T  R+++S
Sbjct: 14  NLVRDCVREELRKNPGGNINLLMRTRQLIANSPLLGTASREAVS 57


>SB_40253| Best HMM Match : Spectrin (HMM E-Value=5.9e-16)
          Length = 1222

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +3

Query: 324 EEHFFLPYKFGDAKMHILDVYMQIHE 401
           ++ F    ++ +A  H++D+Y+++HE
Sbjct: 464 DDQFLKSPEYSEASSHVMDIYLEVHE 489


>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 266 GGPLELCRSSDADSPDASTGRRRESHVENPPVNCSSTAHNKAS 138
           GGP  L  +   +  D+S G R+ ++ E PP   S+  + +A+
Sbjct: 158 GGPRRLPEAPQTNPEDSSPGNRKAANRETPPPGTSTPKNIEAA 200


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 468 IRELLIKKNGENEFFVQTKKQKL 400
           ++ELL K   ENE ++QTKK++L
Sbjct: 829 LKELLEKHKTENEDWIQTKKEEL 851


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 450  KKNGENEFFVQTKKQKLRVFACKRPEYAF*RPQICTVKKNALRGAFTN*RFTKVKPTPPP 271
            + NGE+E F+Q   +  R+   +  + +   P        A+RG       TK+  TPP 
Sbjct: 1209 RANGESEKFMQILNKTERIATLEGKDKSTPHPATGVTPYEAMRGVSVR---TKLDYTPPT 1265

Query: 270  VRRTLGTVSILGRGQ 226
              RT    +I  R +
Sbjct: 1266 TERTAKEEAIDARDE 1280


>SB_26289| Best HMM Match : TLD (HMM E-Value=0.08)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 365 NAYSGR-LHANTRSFCFFVCTKNSFSP 442
           N  SGR   +++RSF F +C KN + P
Sbjct: 273 NTMSGRGYQSSSRSFLFTLCNKNGYRP 299


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,487,113
Number of Sequences: 59808
Number of extensions: 322001
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)