Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0868
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b prot...    29   2.3  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    28   5.4  
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>AF040653-10|AAB95029.1|  580|Caenorhabditis elegans F-box b protein
           protein 49 protein.
          Length = 580

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 422 TKNSFSPFFLINNSRIYYE--ASLSFFSDCKYCGNIINEFQNKNLD 553
           TK     F +  N R Y E   S+ +       GN+  +FQN N+D
Sbjct: 6   TKELVREFHIFKNHRPYLELTGSIGYIEGLSRPGNVFYQFQNGNID 51


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -1

Query: 199 VNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALSVDLGSATSLVDTATIAVNTNN 20
           + +  RTR L +  +L  +  K+  L +   ILK   L   LG+A  LV+  T  ++  N
Sbjct: 786 MRICARTRDLRLDIKLRNRFLKAEQLLIKNGILKTEILENLLGTALYLVENVTAWMHMTN 845

Query: 19  R 17
           R
Sbjct: 846 R 846


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 389 ANTRSFCFFVCTKNSFSPFFLINNSRIYYEASLSFFSDC 505
           AN RS  F   T ++F   ++  N R++Y+A +S  S C
Sbjct: 121 ANARSAAFQDITDDNFL-VWVYPNGRVWYDARISIVSSC 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,333
Number of Sequences: 27780
Number of extensions: 259618
Number of successful extensions: 659
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)