Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0868
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.2  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 395 TRSFCFFVCTKNSFSPFF 448
           T +FC   C  N  +PFF
Sbjct: 41  TNAFCLPFCGPNVINPFF 58


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 395 TRSFCFFVCTKNSFSPFF 448
           T +FC   C  N  +PFF
Sbjct: 40  TNAFCLPFCGPNVINPFF 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 291 VKPTPPPVRRTLGTVSIL 238
           +KP   P R TLG  S+L
Sbjct: 268 IKPEAAPARVTLGVTSLL 285


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 410 FFVCTKNSFSPFFLINNSRIYY 475
           FF+C    F+  F     ++YY
Sbjct: 455 FFICPSIHFAQLFADRGMKVYY 476


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 410 FFVCTKNSFSPFFLINNSRIYY 475
           FF+C    F+  F     ++YY
Sbjct: 455 FFICPSIHFAQLFADRGMKVYY 476


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 291 VKPTPPPVRRTLGTVSIL 238
           +KP   P R TLG  S+L
Sbjct: 237 IKPEAIPARVTLGVTSLL 254


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/39 (30%), Positives = 13/39 (33%)
 Frame = +2

Query: 488 SFFSDCKYCGNIINEFQNKNLDYLXXXXXXXNFPVPTGI 604
           S  + C Y  N  N    K L Y          PVP  I
Sbjct: 306 SLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPIPVPVPI 344


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 247 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLEVILPILKALALS 83
           V  +  + L R PAG+V+      + +VA    T + K  ++     ILK +  S
Sbjct: 74  VHAQVYSCLARSPAGSVHSRDVNVRAVVAQYYDTDVNKEYAIRGNSAILKCVVPS 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,188
Number of Sequences: 438
Number of extensions: 3070
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)