Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0867
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.66 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.66 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.2  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    21   8.2  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 277 QADHPRQVQRHHQVAGFQPAGRQG 348
           Q  HP+  Q HHQ       G+QG
Sbjct: 172 QEQHPQHHQPHHQQQHMMYGGQQG 195


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 277 QADHPRQVQRHHQVAGFQPAGRQG 348
           Q  HP+  Q HHQ       G+QG
Sbjct: 174 QEQHPQHHQPHHQQQHMMYGGQQG 197


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 428 LLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNP 321
           +L+ P T     D K LP      H PP  P G NP
Sbjct: 720 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = -2

Query: 428 LLRHPGTSS*LSDCKCLPILSACAHTPPCRPAGWNP 321
           +L+ P T     D K LP      H PP  P G NP
Sbjct: 612 MLQSPLTPHEAFDVK-LPPPPHPHHQPPRNPVGTNP 646


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 150 KYRNEDDKQKETIQAKNALESY 215
           ++ N D  Q+ + +  NA ESY
Sbjct: 365 QFNNSDFVQRNSTEFDNATESY 386


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,417
Number of Sequences: 336
Number of extensions: 2247
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)