Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0864
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    30   0.38 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.2  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    28   1.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.5  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.5  
SPBC1289.09 |tim21||mitochondrial inner membrane presequence tra...    25   8.1  

>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 251 GPQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 421
           GPQ   + RI    R+ T   +LLHD+E   Y +++++  Q   +    G    L++
Sbjct: 166 GPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQYKKLQQ 222


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +3

Query: 285 SSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSGS*PRTTGKTCLS 458
           SST  S    +SS    SLN++   +  S  I    S  TP TSS S    T  +  S
Sbjct: 214 SSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATS 271


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 7   RSYHYLLSASYFNNYQTNREGFANSSGNYRTIRG 108
           R  HY       NNY+  REG  ++ G YR  RG
Sbjct: 79  RGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRG 112


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +3

Query: 222 HEIGALAKALDRRSSLPRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRV 401
           H+   L+ +   RSS PR  + S   +  +ATS   + + + S +NS  +K +R   S++
Sbjct: 266 HDPSLLSSSKFFRSS-PRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSLSKL 324

Query: 402 TPRTSSGS*PRTTGKTCLS 458
              ++  + P +   T  S
Sbjct: 325 LSTSNLNNKPLSLSSTAPS 343


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 335 ITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNG 442
           I Q  +++FV   +   + L  +  + KR +TENNG
Sbjct: 327 IRQLEQQKFVEIASQRAKELDVYMEEFKRSLTENNG 362


>SPBC1289.09 |tim21||mitochondrial inner membrane presequence
           translocase complex subunit Tim21 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 42  QQLPDEQGRIRELFRKLSDDSWE 110
           Q+ P E+GR+  +F+  S+ +W+
Sbjct: 33  QRKPQEEGRLARIFKDPSNKAWK 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,182
Number of Sequences: 5004
Number of extensions: 50645
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)